DMR Stats | |
---|---|
Position | chr1:2229351-2229500 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | SKI (0bp away) |
ANODEV p-value | 0.00101187467939 |
Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24900 | SKI | 98 | uc001aja.4 | chr1 | 2160134 | 2241652 | + | 150 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
24900 | chr1 | 2229168 | 2229487 | wgEncodeRegTfbsClusteredV3 | YY1 | score:113, expCount:1, expNums:551, expScores:113, srow:7077 |
24900 | chr1 | 2228311 | 2230310 | cpgShelf | — | values(x.gr)[overs$srow, ]:172 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
24900 | cellmeth_recounts | PrEC: 21, LNCaP: 26, DU145: 9 | |
24900 | cellmeth_diffreps_PrECvsDU145 | A=347, B=19, Length=1140, Event=Down, log2FC=-4.19, padj=0 | |
24900 | cellmeth_diffreps_LNCaPvsDU145 | A=91.94, B=12.16, Length=740, Event=Down, log2FC=-2.92, padj=5.72484404733085e-14 | |
24900 | cellexp | id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843 | |
24900 | tcgaexp | gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668 | |
24900 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
24900 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |