DMR Stats | |
---|---|
Position | chr1:1239401-1239600 (View on UCSC) |
Width | 200bp |
Genomic Context | exon |
Nearest Genes | ACAP3 (0bp away) |
ANODEV p-value | 0.00247777806306 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36501 | ACAP3 | 56 | uc001aea.2 | chr1 | 1227764 | 1241309 | - | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (67.5), I1 (32.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
36501 | ACAP3 | 56 | uc001aeb.2 | chr1 | 1227764 | 1243269 | - | 200 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (39), E2 (29), I2 (32.5), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0) | 0.0 |
36501 | ACAP3 | 56 | uc001aec.1 | chr1 | 1234124 | 1244989 | - | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (39), E2 (29), I2 (32.5), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36501 | chr1 | 1239221 | 1239490 | wgEncodeRegDnaseClusteredV2 | 9 | score:255, srow:532 |
36501 | chr1 | 1239586 | 1239855 | wgEncodeRegDnaseClusteredV2 | 3 | score:301, srow:533 |
36501 | chr1 | 1239270 | 1239418 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:296, expCount:1, expNums:368, expScores:296, srow:2728 |
36501 | chr1 | 1239275 | 1239514 | wgEncodeRegTfbsClusteredV3 | USF1 | score:157, expCount:1, expNums:265, expScores:157, srow:2729 |
36501 | chr1 | 1239462 | 1239472 | tfbsConsSites | V$EVI1_02 | score:862, zScore:2.02, srow:951 |
36501 | chr1 | 1239505 | 1239505 | cosmic | COSM894833 | srow:608 |
36501 | chr1 | 1239517 | 1239517 | cosmic | COSM1151807 | srow:609 |
36501 | chr1 | 1239464 | 1239471 | phastConsElements100way | lod=77 | score:423, srow:4975 |
36501 | chr1 | 1239473 | 1239483 | phastConsElements100way | lod=52 | score:385, srow:4976 |
36501 | chr1 | 1239485 | 1239489 | phastConsElements100way | lod=35 | score:345, srow:4977 |
36501 | chr1 | 1239491 | 1239495 | phastConsElements100way | lod=25 | score:312, srow:4978 |
36501 | chr1 | 1239497 | 1239498 | phastConsElements100way | lod=18 | score:280, srow:4979 |
36501 | chr1 | 1239503 | 1239510 | phastConsElements100way | lod=59 | score:397, srow:4980 |
36501 | chr1 | 1239512 | 1239513 | phastConsElements100way | lod=24 | score:308, srow:4981 |
36501 | chr1 | 1239515 | 1239516 | phastConsElements100way | lod=17 | score:274, srow:4982 |
36501 | chr1 | 1239521 | 1239526 | phastConsElements100way | lod=56 | score:392, srow:4983 |
36501 | chr1 | 1238401 | 1240400 | cpgShelf | — | values(x.gr)[overs$srow, ]:64 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36501 | cellmeth_recounts | PrEC: 29, LNCaP: 111, DU145: 5 | |
36501 | cellmeth_diffreps_PrECvsLNCaP | A=7, B=39, Length=280, Event=Up, log2FC=2.48, padj=3.76093428258939e-05 | |
36501 | cellmeth_diffreps_PrECvsDU145 | A=44, B=4, Length=400, Event=Down, log2FC=-3.46, padj=4.3150681074872e-08 | |
36501 | cellmeth_diffreps_LNCaPvsDU145 | A=131.49, B=3.74, Length=820, Event=Down, log2FC=-5.14, padj=0 | |
36501 | cellexp | id=ENSG00000131584, name=ACAP3, PrEC=2300, str=4555, LNCaP=5904, str=2324, DU145=1592, str=1301 | |
36501 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
36501 | tcgaexp | gene=ACAP3, entrez=116983, pos=chr1:1227764-1244989(-), B=1247, L=1285, M=1235, H=1331 | |
36501 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |