DMR Stats | |
---|---|
Position | chr1:1372701-1372850 (View on UCSC) |
Width | 150bp |
Genomic Context | exon |
Nearest Genes | VWA1 (0bp away) |
ANODEV p-value | 0.018844004522 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36506 | VWA1 | 69 | uc001afr.3 | chr1 | 1370903 | 1378262 | + | 150 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0.67), E2 (99.33), I2 (0), E3 (0) | 0.0 |
36506 | VWA1 | 69 | uc001afs.3 | chr1 | 1370903 | 1378262 | + | 150 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0), E2 (100), I2 (0), E3 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36506 | chr1 | 1372421 | 1373275 | wgEncodeRegDnaseClusteredV2 | 20 | score:686, srow:670 |
36506 | chr1 | 1372715 | 1372725 | tfbsConsSites | V$AP1FJ_Q2 | score:926, zScore:2.04, srow:1589 |
36506 | chr1 | 1372716 | 1372727 | tfbsConsSites | V$CREB_02 | score:857, zScore:1.79, srow:1590 |
36506 | chr1 | 1372725 | 1372748 | tfbsConsSites | V$COMP1_01 | score:796, zScore:1.91, srow:1591 |
36506 | chr1 | 1372740 | 1372757 | tfbsConsSites | V$RFX1_02 | score:848, zScore:2.26, srow:1592 |
36506 | chr1 | 1372765 | 1372782 | tfbsConsSites | V$AP4_01 | score:823, zScore:1.85, srow:1593 |
36506 | chr1 | 1372746 | 1372746 | cosmic | COSM528043 | srow:848 |
36506 | chr1 | 1372777 | 1372777 | cosmic | COSM326865 | srow:849 |
36506 | chr1 | 1372693 | 1372718 | phastConsElements100way | lod=154 | score:492, srow:6401 |
36506 | chr1 | 1372720 | 1372721 | phastConsElements100way | lod=34 | score:343, srow:6402 |
36506 | chr1 | 1372726 | 1372733 | phastConsElements100way | lod=65 | score:407, srow:6403 |
36506 | chr1 | 1372735 | 1372742 | phastConsElements100way | lod=61 | score:400, srow:6404 |
36506 | chr1 | 1372744 | 1372745 | phastConsElements100way | lod=27 | score:320, srow:6405 |
36506 | chr1 | 1372747 | 1372748 | phastConsElements100way | lod=14 | score:255, srow:6406 |
36506 | chr1 | 1372750 | 1372755 | phastConsElements100way | lod=58 | score:395, srow:6407 |
36506 | chr1 | 1372760 | 1372766 | phastConsElements100way | lod=48 | score:377, srow:6408 |
36506 | chr1 | 1372771 | 1372771 | phastConsElements100way | lod=14 | score:255, srow:6409 |
36506 | chr1 | 1372774 | 1372775 | phastConsElements100way | lod=26 | score:316, srow:6410 |
36506 | chr1 | 1372777 | 1372781 | phastConsElements100way | lod=50 | score:381, srow:6411 |
36506 | chr1 | 1372786 | 1372787 | phastConsElements100way | lod=23 | score:304, srow:6412 |
36506 | chr1 | 1372792 | 1372794 | phastConsElements100way | lod=31 | score:333, srow:6413 |
36506 | chr1 | 1372798 | 1372808 | phastConsElements100way | lod=63 | score:404, srow:6414 |
36506 | chr1 | 1372810 | 1372814 | phastConsElements100way | lod=78 | score:425, srow:6415 |
36506 | chr1 | 1372816 | 1372820 | phastConsElements100way | lod=57 | score:394, srow:6416 |
36506 | chr1 | 1372822 | 1372826 | phastConsElements100way | lod=34 | score:343, srow:6417 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36506 | cellmeth_recounts | PrEC: 15, LNCaP: 183, DU145: 1 | |
36506 | cellmeth_diffreps_PrECvsLNCaP | A=68, B=433, Length=1120, Event=Up, log2FC=2.67, padj=0 | |
36506 | cellmeth_diffreps_PrECvsDU145 | A=67, B=7, Length=620, Event=Down, log2FC=-3.26, padj=8.97894501171479e-12 | |
36506 | cellmeth_diffreps_LNCaPvsDU145 | A=457.55, B=14.97, Length=1040, Event=Down, log2FC=-4.93, padj=0 | |
36506 | cellexp | id=ENSG00000179403, name=VWA1, PrEC=3375, str=1848, LNCaP=6035, str=4905, DU145=1828, str=1228 | |
36506 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
36506 | tcgaexp | gene=VWA1, entrez=64856, pos=chr1:1370903-1378262(+), B=16879, L=17310, M=14366, H=11700 | |
36506 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |