DMR Stats | |
---|---|
Position | chr1:3567151-3568050 (View on UCSC) |
Width | 900bp |
Genomic Context | promoter |
Nearest Genes | WRAP73 (479bp away) |
ANODEV p-value | 0.000465411970404 |
Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
24914 | chr1 | 3567148 | 3567155 | tfbsConsSites | V$TBP_01 | score:974, zScore:1.77, srow:6743 |
24914 | chr1 | 3567899 | 3567913 | tfbsConsSites | V$TAXCREB_01 | score:799, zScore:2.09, srow:6744 |
24914 | chr1 | 3567916 | 3567933 | tfbsConsSites | V$MIF1_01 | score:762, zScore:1.66, srow:6745 |
24914 | chr1 | 3566955 | 3568367 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:253, expCount:2, expNums:358,578, expScores:89,192, srow:9965 |
24914 | chr1 | 3566536 | 3567195 | wgEncodeRegTfbsClusteredV3 | KAP1 | score:285, expCount:1, expNums:588, expScores:285, srow:9951 |
24914 | chr1 | 3566909 | 3570034 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:7, expNums:6,19,21,36,38,40,43, expScores:400,129,458,420,207,297,390, srow:9964 |
24914 | chr1 | 3566446 | 3569636 | cpgIsland | CpG: 284 | length:3191, cpgNum:284, gcNum:1988, perCpg:17.8, perGc:62.3, obsExp:0.92, srow:281 |
24914 | chr1 | 3567938 | 3568135 | wgEncodeRegTfbsClusteredV3 | CTCF | score:121, expCount:2, expNums:606,607, expScores:120,121, srow:9966 |
24914 | chr1 | 3567951 | 3568550 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:146, expCount:1, expNums:348, expScores:146, srow:9967 |
24914 | chr1 | 3567226 | 3570175 | wgEncodeRegDnaseClusteredV2 | 65 | score:1000, srow:2832 |
24914 | chr1 | 3567121 | 3567175 | wgEncodeRegDnaseClusteredV2 | 2 | score:150, srow:2831 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
24914 | cellmeth_recounts | PrEC: 120, LNCaP: 491, DU145: 26 | |
24914 | cellmeth_diffreps_PrECvsLNCaP | A=36, B=243, Length=740, Event=Up, log2FC=2.75, padj=0 | |
24914 | cellmeth_diffreps_PrECvsLNCaP | A=52, B=155, Length=660, Event=Up, log2FC=1.58, padj=2.40197647658315e-11 | |
24914 | cellmeth_diffreps_PrECvsDU145 | A=191, B=13, Length=760, Event=Down, log2FC=-3.88, padj=0 | |
24914 | cellmeth_diffreps_LNCaPvsDU145 | A=515.28, B=23.39, Length=1500, Event=Down, log2FC=-4.46, padj=0 | |
24914 | cellexp | id=ENSG00000116213, name=WRAP73, PrEC=1419, str=857, LNCaP=1740, str=1219, DU145=1092, str=961 | |
24914 | tcgameth | site:cg01434649, B=0.6, L=0.77, H=0.74 | |
24914 | tcgameth | site:cg04021697, B=0.16, L=0.57, H=0.52 | |
24914 | tcgameth | site:cg04391111, B=0.28, L=0.37, H=0.33 | |
24914 | tcgameth | site:cg07382920, B=0.29, L=0.49, H=0.5 | |
24914 | tcgameth | site:cg10038618, B=0.47, L=0.65, H=0.61 | |
24914 | tcgameth | site:cg12475507, B=0.62, L=0.74, H=0.7 | |
24914 | tcgameth | site:cg16823083, B=0.32, L=0.63, H=0.62 | |
24914 | tcgameth | site:cg20611911, B=0.33, L=0.6, H=0.54 | |
24914 | tcgameth | site:cg21000072, B=0.25, L=0.45, H=0.42 | |
24914 | tcgameth | site:cg24073122, B=0.26, L=0.51, H=0.48 | |
24914 | tcgameth | site:cg24678611, B=0.46, L=0.64, H=0.62 | |
24914 | tcgameth | site:cg25731359, B=0.38, L=0.51, H=0.54 | |
24914 | tcgameth | site:cg26128092, B=0.26, L=0.38, H=0.43 | |
24914 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
24914 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |