DMR 26748 chr2:235404251-235404800 (550bp)

DMR Stats
Positionchr2:235404251-235404800 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesARL4C (0bp away)
ANODEV p-value1.30140342947e-11
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26748 ARL4C 17769 uc002vvm.4 chr2 235401686 235405233 - 550 100.0 0.1 0 12.18 E1 (26.36), I1 (32), E2 (41.82) 0.0
26748 ARL4C 17769 uc002vvn.3 chr2 235401686 235405693 - 550 100.0 0.1 0 0.0 E1 (100) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26748 chr2 235404387 235404406 phastConsElements100way lod=78 score:425, srow:5207780
26748 chr2 235404272 235404286 phastConsElements100way lod=51 score:383, srow:5207777
26748 chr2 235404797 235404816 phastConsElements100way lod=231 score:532, srow:5207787
26748 chr2 235404585 235404597 phastConsElements100way lod=18 score:280, srow:5207783
26748 chr2 235404247 235404258 phastConsElements100way lod=17 score:274, srow:5207776
26748 chr2 235404517 235404554 phastConsElements100way lod=165 score:499, srow:5207782
26748 chr2 235404323 235404326 phastConsElements100way lod=16 score:268, srow:5207779
26748 chr2 235404650 235404781 phastConsElements100way lod=1390 score:710, srow:5207785
26748 chr2 235404313 235404317 phastConsElements100way lod=13 score:247, srow:5207778
26748 chr2 235404410 235404413 phastConsElements100way lod=13 score:247, srow:5207781
26748 chr2 235404629 235404633 phastConsElements100way lod=13 score:247, srow:5207784
26748 chr2 235404785 235404795 phastConsElements100way lod=104 score:453, srow:5207786
26748 chr2 235404743 235404757 tfbsConsSites V$TAXCREB_02 score:764, zScore:2.02, srow:3016630
26748 chr2 235404730 235404748 tfbsConsSites V$PAX2_01 score:799, zScore:2.33, srow:3016627
26748 chr2 235404344 235404357 tfbsConsSites V$P300_01 score:887, zScore:2.45, srow:3016623
26748 chr2 235404351 235404358 tfbsConsSites V$MZF1_01 score:1000, zScore:2.23, srow:3016624
26748 chr2 235404305 235404316 tfbsConsSites V$LMO2COM_01 score:919, zScore:1.7, srow:3016622
26748 chr2 235404674 235404689 tfbsConsSites V$ELK1_01 score:873, zScore:2.27, srow:3016625
26748 chr2 235404677 235404686 tfbsConsSites V$CETS1P54_01 score:941, zScore:1.75, srow:3016626
26748 chr2 235404741 235404754 tfbsConsSites V$CEBPB_02 score:847, zScore:1.66, srow:3016628
26748 chr2 235404742 235404752 tfbsConsSites V$BACH2_01 score:881, zScore:1.96, srow:3016629
26748 chr2 235404245 235404260 tfbsConsSites V$ARP1_01 score:804, zScore:1.97, srow:3016621
26748 chr2 235404780 235404795 tfbsConsSites V$AHRARNT_01 score:852, zScore:2.1, srow:3016631
26748 chr2 235404039 235404298 wgEncodeRegTfbsClusteredV3 TCF12 score:144, expCount:1, expNums:159, expScores:144, srow:2420865
26748 chr2 235404060 235404435 wgEncodeRegTfbsClusteredV3 TBP score:164, expCount:1, expNums:359, expScores:164, srow:2420868
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  • 25 of 43 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26748 cellmeth_recounts PrEC: 1, LNCaP: 1487, DU145: 6
26748 cellmeth_diffreps_PrECvsLNCaP A=17, B=2261, Length=1600, Event=Up, log2FC=7.06, padj=0
26748 cellmeth_diffreps_LNCaPvsDU145 A=2417.11, B=9.35, Length=1620, Event=Down, log2FC=-8.01, padj=0
26748 cellexp id=ENSG00000188042, name=ARL4C, PrEC=24273, str=25479, LNCaP=161, str=243, DU145=477, str=675
26748 tcgameth site:cg11509907, B=0.09, L=0.37, H=0.38
26748 tcgaexp gene=ARL4C, entrez=10123, pos=chr2:235401686-235405693(-), B=2057, L=1304, M=1190, H=1246