DMR Stats | |
---|---|
Position | chr1:3800201-3800400 (View on UCSC) |
Width | 200bp |
Genomic Context | exon |
Nearest Genes | DFFB (0bp away) |
ANODEV p-value | 0.0019337287085 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
48 | DFFB | 130 | uc001alb.3 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 0.89 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 0.0 |
48 | DFFB | 130 | uc001alc.3 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 0.89 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 0.0 |
48 | DFFB | 130 | uc001ald.3 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 0.9 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 0.0 |
48 | DFFB | 130 | uc001ale.3 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 0.45 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 0.0 |
48 | DFFB | 130 | uc009vlp.3 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 0.45 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 0.0 |
48 | DFFB | 130 | uc009vlq.3 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 2.04 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 0.0 |
48 | DFFB | 130 | uc009vlr.3 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 1.65 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 0.0 |
48 | DFFB | 130 | uc010nzn.2 | chr1 | 3773845 | 3801993 | + | 200 | 100.0 | 2.24 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
48 | chr1 | 3800246 | 3800255 | phastConsElements100way | lod=65 | score:407, srow:16921 |
48 | chr1 | 3800222 | 3800229 | phastConsElements100way | lod=55 | score:390, srow:16918 |
48 | chr1 | 3800237 | 3800241 | phastConsElements100way | lod=45 | score:370, srow:16920 |
48 | chr1 | 3800233 | 3800235 | phastConsElements100way | lod=36 | score:348, srow:16919 |
48 | chr1 | 3800195 | 3800217 | phastConsElements100way | lod=233 | score:533, srow:16917 |
48 | chr1 | 3800277 | 3800281 | phastConsElements100way | lod=18 | score:280, srow:16922 |
48 | chr1 | 3800303 | 3800305 | phastConsElements100way | lod=13 | score:247, srow:16923 |
48 | chr1 | 3800204 | 3800204 | cosmic | COSM680852 | srow:2715 |
48 | chr1 | 3800260 | 3800260 | cosmic | COSM414945 | srow:2716 |
48 | chr1 | 3800161 | 3800350 | wgEncodeRegDnaseClusteredV2 | 2 | score:1000, srow:3073 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
48 | cellmeth_recounts | PrEC: 65, LNCaP: 9, DU145: 6 | |
48 | cellmeth_diffreps_PrECvsLNCaP | A=97, B=7, Length=420, Event=Down, log2FC=-3.79, padj=0 | |
48 | cellmeth_diffreps_PrECvsDU145 | A=97, B=11, Length=400, Event=Down, log2FC=-3.14, padj=0 | |
48 | cellmeth_diffreps_PrECvsDU145 | A=0, B=13, Length=320, Event=Up, log2FC=Inf, padj=0.000941091010072773 | |
48 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864 | |
48 | cellexp | id=ENSG00000169598, name=DFFB, PrEC=432, str=242, LNCaP=840, str=1119, DU145=293, str=256 | |
48 | tcgaexp | gene=DFFB, entrez=1677, pos=chr1:3773845-3801993(+), B=250, L=304, M=298, H=352 | |
48 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
48 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |