DMR 30218 chr9:6412301-6412850 (550bp)

DMR Stats
Positionchr9:6412301-6412850 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesUHRF2 (300bp away)
ANODEV p-value7.36160539934e-10
FrequenciesBenign: 3.0 (42.86%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30218 chr9 6412793 6413139 wgEncodeRegTfbsClusteredV3 EGR1 score:461, expCount:3, expNums:87,138,216, expScores:461,150,228, srow:4120182
30218 chr9 6412354 6414097 cpgIsland CpG: 178 length:1744, cpgNum:178, gcNum:1144, perCpg:20.4, perGc:65.6, obsExp:0.95, srow:26334
30218 chr9 6412640 6413155 wgEncodeRegTfbsClusteredV3 CEBPB score:407, expCount:3, expNums:85,378,477, expScores:216,407,173, srow:4120174
30218 chr9 6412456 6412895 wgEncodeRegTfbsClusteredV3 CBX3 score:292, expCount:1, expNums:211, expScores:292, srow:4120161
30218 chr9 6412503 6412832 wgEncodeRegTfbsClusteredV3 BHLHE40 score:291, expCount:1, expNums:284, expScores:291, srow:4120167
30218 chr9 6412498 6412853 wgEncodeRegTfbsClusteredV3 BCL3 score:175, expCount:1, expNums:83, expScores:175, srow:4120165
30218 chr9 6412793 6413072 wgEncodeRegTfbsClusteredV3 BCL11A score:141, expCount:1, expNums:82, expScores:141, srow:4120181
30218 chr9 6412206 6412355 wgEncodeRegDnaseClusteredV2 3 score:161, srow:1200644
30218 chr9 6412421 6413270 wgEncodeRegDnaseClusteredV2 125 score:1000, srow:1200645
30218 chr9 6410354 6412353 cpgShore — values(x.gr)[overs$srow, ]:47658

Omics Overlaps

Dmrid Omic Set Data Plot
30218 cellmeth_recounts PrEC: 39, LNCaP: 302, DU145: 35
30218 cellmeth_diffreps_PrECvsLNCaP A=48, B=233, Length=640, Event=Up, log2FC=2.28, padj=0
30218 cellmeth_diffreps_PrECvsDU145 A=58, B=17, Length=380, Event=Down, log2FC=-1.77, padj=7.26627788439946e-05
30218 cellmeth_diffreps_LNCaPvsDU145 A=264.05, B=25.26, Length=740, Event=Down, log2FC=-3.39, padj=0
30218 tcgameth site:cg24119045, B=0.08, L=0.27, H=0.23