DMR Stats | |
---|---|
Position | chr17:82001-82200 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | RPH3AL (0bp away) |
ANODEV p-value | 4.73734342907e-05 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8081 | RPH3AL | 11877 | uc002fre.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
8081 | RPH3AL | 11877 | uc002frf.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.74 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
8081 | RPH3AL | 11877 | uc010cjl.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.74 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
8081 | RPH3AL | 11877 | uc010vpy.2 | chr17 | 62180 | 177370 | - | 200 | 100.0 | 0.32 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) | 0.0 |
8081 | RPH3AL | 11877 | uc021tmx.1 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.32 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
8081 | chr17 | 81748 | 82067 | wgEncodeRegTfbsClusteredV3 | E2F4 | score:274, expCount:1, expNums:291, expScores:274, srow:1606228 |
8081 | chr17 | 81765 | 82080 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:420, expCount:2, expNums:86,292, expScores:324,420, srow:1606229 |
8081 | chr17 | 81010 | 83009 | cpgShelf | — | values(x.gr)[overs$srow, ]:15379 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
8081 | cellmeth_recounts | PrEC: 35, LNCaP: 6, DU145: 14 | |
8081 | cellmeth_diffreps_PrECvsLNCaP | A=62, B=5, Length=440, Event=Down, log2FC=-3.63, padj=3.89232257711764e-12 | |
8081 | cellmeth_diffreps_PrECvsDU145 | A=59, B=12, Length=400, Event=Down, log2FC=-2.3, padj=5.15522839206326e-07 | |
8081 | cellexp | id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616 | |
8081 | tcgaexp | gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475 |