DMR Stats | |
---|---|
Position | chr1:1372701-1372850 (View on UCSC) |
Width | 150bp |
Genomic Context | exon |
Nearest Genes | VWA1 (0bp away) |
ANODEV p-value | 0.018844004522 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36506 | VWA1 | 69 | uc001afr.3 | chr1 | 1370903 | 1378262 | + | 150 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0.67), E2 (99.33), I2 (0), E3 (0) | 0.0 |
36506 | VWA1 | 69 | uc001afs.3 | chr1 | 1370903 | 1378262 | + | 150 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0), E2 (100), I2 (0), E3 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36506 | chr1 | 1372831 | 1372835 | phastConsElements100way | lod=54 | score:388, srow:6418 |
36506 | chr1 | 1372843 | 1372847 | phastConsElements100way | lod=28 | score:323, srow:6419 |
36506 | chr1 | 1372850 | 1372850 | phastConsElements100way | lod=14 | score:255, srow:6420 |
36506 | chr1 | 1371450 | 1374461 | cpgShore | — | values(x.gr)[overs$srow, ]:147 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36506 | cellmeth_recounts | PrEC: 15, LNCaP: 183, DU145: 1 | |
36506 | cellmeth_diffreps_PrECvsLNCaP | A=68, B=433, Length=1120, Event=Up, log2FC=2.67, padj=0 | |
36506 | cellmeth_diffreps_PrECvsDU145 | A=67, B=7, Length=620, Event=Down, log2FC=-3.26, padj=8.97894501171479e-12 | |
36506 | cellmeth_diffreps_LNCaPvsDU145 | A=457.55, B=14.97, Length=1040, Event=Down, log2FC=-4.93, padj=0 | |
36506 | cellexp | id=ENSG00000179403, name=VWA1, PrEC=3375, str=1848, LNCaP=6035, str=4905, DU145=1828, str=1228 | |
36506 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
36506 | tcgaexp | gene=VWA1, entrez=64856, pos=chr1:1370903-1378262(+), B=16879, L=17310, M=14366, H=11700 | |
36506 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |