DMR Stats | |
---|---|
Position | chr1:1167951-1168200 (View on UCSC) |
Width | 250bp |
Genomic Context | promoter |
Nearest Genes | B3GALT6 (0bp away) |
ANODEV p-value | 0.0274000105313 |
Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24873 | B3GALT6 | 52 | uc001adk.3 | chr1 | 1167629 | 1170420 | + | 250 | 100.0 | 0.17 | 0 | 71.2 | E1 (100) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
24873 | chr1 | 1167944 | 1167951 | phastConsElements100way | lod=69 | score:413, srow:4348 |
24873 | chr1 | 1167956 | 1167957 | phastConsElements100way | lod=34 | score:343, srow:4349 |
24873 | chr1 | 1167959 | 1167963 | phastConsElements100way | lod=29 | score:327, srow:4350 |
24873 | chr1 | 1167968 | 1167981 | phastConsElements100way | lod=66 | score:408, srow:4351 |
24873 | chr1 | 1167537 | 1167993 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:723, expCount:1, expNums:30, expScores:723, srow:2416 |
24873 | chr1 | 1167983 | 1168002 | phastConsElements100way | lod=134 | score:478, srow:4352 |
24873 | chr1 | 1168004 | 1168008 | phastConsElements100way | lod=44 | score:368, srow:4353 |
24873 | chr1 | 1168003 | 1168010 | tfbsConsSites | V$USF_C | score:945, zScore:1.9, srow:747 |
24873 | chr1 | 1168002 | 1168020 | tfbsConsSites | V$SEF1_C | score:745, zScore:2.16, srow:746 |
24873 | chr1 | 1168005 | 1168026 | tfbsConsSites | V$HEN1_01 | score:807, zScore:2.18, srow:748 |
24873 | chr1 | 1168010 | 1168026 | phastConsElements100way | lod=159 | score:495, srow:4354 |
24873 | chr1 | 1168018 | 1168038 | tfbsConsSites | V$NRSF_01 | score:726, zScore:1.98, srow:749 |
24873 | chr1 | 1168031 | 1168038 | phastConsElements100way | lod=59 | score:397, srow:4355 |
24873 | chr1 | 1168040 | 1168041 | phastConsElements100way | lod=21 | score:295, srow:4356 |
24873 | chr1 | 1167775 | 1168044 | wgEncodeRegTfbsClusteredV3 | USF1 | score:221, expCount:2, expNums:118,265, expScores:195,221, srow:2421 |
24873 | chr1 | 1168043 | 1168053 | phastConsElements100way | lod=107 | score:456, srow:4357 |
24873 | chr1 | 1168055 | 1168056 | phastConsElements100way | lod=23 | score:304, srow:4358 |
24873 | chr1 | 1168053 | 1168071 | tfbsConsSites | V$HNF4_01 | score:809, zScore:1.7, srow:750 |
24873 | chr1 | 1167533 | 1168095 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:1000, expCount:1, expNums:390, expScores:1000, srow:2415 |
24873 | chr1 | 1168090 | 1168103 | tfbsConsSites | V$MYCMAX_01 | score:850, zScore:2.5, srow:753 |
24873 | chr1 | 1168089 | 1168105 | tfbsConsSites | V$XBP1_01 | score:792, zScore:1.86, srow:752 |
24873 | chr1 | 1168087 | 1168106 | tfbsConsSites | V$MYCMAX_03 | score:802, zScore:1.99, srow:751 |
24873 | chr1 | 1168097 | 1168114 | tfbsConsSites | V$IRF7_01 | score:820, zScore:2.11, srow:754 |
24873 | chr1 | 1168120 | 1168120 | cosmic | COSM675155 | srow:428 |
24873 | chr1 | 1168058 | 1168122 | phastConsElements100way | lod=569 | score:621, srow:4359 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
24873 | cellmeth_recounts | PrEC: 76, LNCaP: 1639, DU145: 17 | |
24873 | cellmeth_diffreps_PrECvsLNCaP | A=2094, B=5608, Length=1280, Event=Up, log2FC=1.42, padj=0 | |
24873 | cellmeth_diffreps_PrECvsDU145 | A=2459, B=61, Length=2260, Event=Down, log2FC=-5.33, padj=0 | |
24873 | cellmeth_diffreps_LNCaPvsDU145 | A=7565.63, B=74.83, Length=4420, Event=Down, log2FC=-6.66, padj=0 | |
24873 | cellexp | id=ENSG00000176022, name=B3GALT6, PrEC=1331, str=1813, LNCaP=5670, str=4604, DU145=1966, str=1484 | |
24873 | tcgameth | site:cg19945840, B=0.49, L=0.63, H=0.59 | |
24873 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
24873 | tcgaexp | gene=B3GALT6, entrez=126792, pos=chr1:1167629-1170420(+), B=1240, L=2122, M=2201, H=1928 | |
24873 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |