DMR 25047 chr1:16482651-16482900 (250bp)

DMR Stats
Positionchr1:16482651-16482900 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesEPHA2 (68bp away)
ANODEV p-value0.00166347572635
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25047 chr1 16482639 16482653 tfbsConsSites V$TATA_01 score:906, zScore:2.49, srow:34060
25047 chr1 16482621 16482653 phastConsElements100way lod=191 score:513, srow:62442
25047 chr1 16482677 16482684 phastConsElements100way lod=15 score:262, srow:62443
25047 chr1 16482383 16482686 wgEncodeRegTfbsClusteredV3 FOXP2 score:186, expCount:1, expNums:251, expScores:186, srow:42412
25047 chr1 16482157 16482687 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:295, expCount:4, expNums:195,250,253,260, expScores:295,152,124,185, srow:42400
25047 chr1 16482343 16482698 wgEncodeRegTfbsClusteredV3 TAF7 score:326, expCount:1, expNums:158, expScores:326, srow:42408
25047 chr1 16482461 16482720 wgEncodeRegTfbsClusteredV3 FOSL2 score:335, expCount:1, expNums:176, expScores:335, srow:42424
25047 chr1 16482447 16482722 wgEncodeRegTfbsClusteredV3 CEBPD score:106, expCount:1, expNums:173, expScores:106, srow:42419
25047 chr1 16482444 16482723 wgEncodeRegTfbsClusteredV3 CREB1 score:551, expCount:1, expNums:47, expScores:551, srow:42417
25047 chr1 16482486 16482749 wgEncodeRegTfbsClusteredV3 CEBPB score:241, expCount:1, expNums:378, expScores:241, srow:42429
25047 chr1 16482530 16482749 wgEncodeRegTfbsClusteredV3 ZBTB7A score:153, expCount:1, expNums:205, expScores:153, srow:42430
25047 chr1 16482452 16482750 wgEncodeRegTfbsClusteredV3 JUN score:194, expCount:3, expNums:346,428,458, expScores:140,194,116, srow:42420
25047 chr1 16482379 16482754 wgEncodeRegTfbsClusteredV3 TBP score:757, expCount:3, expNums:359,412,452, expScores:687,389,757, srow:42411
25047 chr1 16482378 16482777 wgEncodeRegTfbsClusteredV3 FOS score:168, expCount:3, expNums:457,556,557, expScores:168,157,160, srow:42410
25047 chr1 16482446 16482779 wgEncodeRegTfbsClusteredV3 JUND score:686, expCount:5, expNums:142,184,350,393,435, expScores:374,420,532,176,686, srow:42418
25047 chr1 16482325 16482780 wgEncodeRegTfbsClusteredV3 TAF1 score:929, expCount:6, expNums:65,157,169,199,254,261, expScores:172,929,508,861,323,587, srow:42405
25047 chr1 16481485 16482782 cpgIsland CpG: 118 length:1298, cpgNum:118, gcNum:892, perCpg:18.2, perGc:68.7, obsExp:0.77, srow:496
25047 chr1 16482459 16482783 wgEncodeRegTfbsClusteredV3 EP300 score:208, expCount:2, expNums:145,190, expScores:193,208, srow:42422
25047 chr1 16482475 16482790 wgEncodeRegTfbsClusteredV3 BRCA1 score:719, expCount:2, expNums:374,424, expScores:719,158, srow:42428
25047 chr1 16482531 16482790 wgEncodeRegTfbsClusteredV3 SMC3 score:190, expCount:1, expNums:408, expScores:190, srow:42431
25047 chr1 16482455 16482794 wgEncodeRegTfbsClusteredV3 RFX5 score:250, expCount:2, expNums:406,449, expScores:175,250, srow:42421
25047 chr1 16482461 16482800 wgEncodeRegTfbsClusteredV3 HDAC2 score:168, expCount:1, expNums:181, expScores:168, srow:42423
25047 chr1 16482411 16482806 wgEncodeRegTfbsClusteredV3 MAX score:146, expCount:1, expNums:395, expScores:146, srow:42415
25047 chr1 16482304 16482807 wgEncodeRegTfbsClusteredV3 REST score:253, expCount:4, expNums:59,189,252,258, expScores:253,197,204,195, srow:42404
25047 chr1 16482342 16482812 wgEncodeRegTfbsClusteredV3 MXI1 score:204, expCount:2, expNums:397,441, expScores:164,204, srow:42407
  • Page 1 of 2
  • 25 of 39 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25047 cellmeth_recounts PrEC: 0, LNCaP: 15, DU145: 0
25047 cellmeth_diffreps_PrECvsLNCaP A=0, B=12, Length=280, Event=Up, log2FC=Inf, padj=0.00157949948552458
25047 cellmeth_diffreps_LNCaPvsDU145 A=12.83, B=0, Length=280, Event=Down, log2FC=-Inf, padj=0.00293113488474198
25047 cellexp id=ENSG00000227959, name=RP11-276H7.2, PrEC=46, str=37, LNCaP=5, str=3, DU145=34, str=44
25047 tcgameth site:cg09178261, B=0.27, L=0.51, H=0.44
25047 tcgameth site:cg15146752, B=0.36, L=0.67, H=0.62
25047 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25047 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305