DMR 25124 chr1:22140751-22141350 (600bp)

DMR Stats
Positionchr1:22140751-22141350 (View on UCSC)
Width600bp
Genomic Contextexon
Nearest GenesLDLRAD2 (0bp away)
ANODEV p-value2.25382051771e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25124 LDLRAD2 396 uc001bfg.1 chr1 22138758 22151714 + 600 100.0 1.28 0 0.0 E1 (0), I1 (23.33), E2 (71), I2 (5.83), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25124 chr1 22138892 22140891 cpgShore — values(x.gr)[overs$srow, ]:1072
25124 chr1 22140888 22140912 phastConsElements100way lod=186 score:511, srow:84320
25124 chr1 22140901 22140920 tfbsConsSites V$P53_01 score:694, zScore:2.04, srow:44931
25124 chr1 22140931 22140931 cosmic COSM904205 srow:13265
25124 chr1 22140646 22140941 wgEncodeRegTfbsClusteredV3 RCOR1 score:187, expCount:1, expNums:492, expScores:187, srow:57475
25124 chr1 22140944 22140944 cosmic COSM1213247 srow:13266
25124 chr1 22140657 22140946 wgEncodeRegTfbsClusteredV3 ZNF143 score:326, expCount:1, expNums:361, expScores:326, srow:57476
25124 chr1 22140914 22140948 phastConsElements100way lod=152 score:491, srow:84321
25124 chr1 22140950 22140952 phastConsElements100way lod=27 score:320, srow:84322
25124 chr1 22140956 22140957 phastConsElements100way lod=14 score:255, srow:84323
25124 chr1 22140959 22140960 phastConsElements100way lod=20 score:290, srow:84324
25124 chr1 22140972 22140972 cosmic COSM338653 srow:13267
25124 chr1 22140962 22140981 phastConsElements100way lod=135 score:479, srow:84325
25124 chr1 22140986 22140990 phastConsElements100way lod=36 score:348, srow:84326
25124 chr1 22140992 22140997 phastConsElements100way lod=67 score:410, srow:84327
25124 chr1 22141000 22141006 phastConsElements100way lod=51 score:383, srow:84328
25124 chr1 22141008 22141017 phastConsElements100way lod=59 score:397, srow:84329
25124 chr1 22141020 22141020 cosmic COSM904206 srow:13268
25124 chr1 22141030 22141030 cosmic COSM425365 srow:13269
25124 chr1 22141034 22141049 tfbsConsSites V$ELK1_01 score:854, zScore:1.95, srow:44932
25124 chr1 22141043 22141057 tfbsConsSites V$ISRE_01 score:808, zScore:2.16, srow:44933
25124 chr1 22141028 22141072 phastConsElements100way lod=423 score:592, srow:84330
25124 chr1 22141079 22141079 cosmic COSM1339038 srow:13270
25124 chr1 22141121 22141121 cosmic COSM532853 srow:13271
25124 chr1 22141118 22141122 phastConsElements100way lod=27 score:320, srow:84331
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  • 25 of 76 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25124 cellmeth_recounts PrEC: 22, LNCaP: 53, DU145: 10
25124 cellmeth_diffreps_PrECvsLNCaP A=0, B=31, Length=480, Event=Up, log2FC=Inf, padj=4.50368607357446e-09
25124 cellmeth_diffreps_PrECvsLNCaP A=37, B=7, Length=280, Event=Down, log2FC=-2.4, padj=0.000105030392384157
25124 cellmeth_diffreps_PrECvsDU145 A=39, B=2, Length=400, Event=Down, log2FC=-4.29, padj=1.74472441487967e-08
25124 cellmeth_diffreps_LNCaPvsDU145 A=11.76, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00547907730955432
25124 cellexp id=ENSG00000187942, name=LDLRAD2, PrEC=11, str=34, LNCaP=0, str=1, DU145=66, str=33
25124 tcgameth site:cg13403586, B=0.06, L=0.35, H=0.32
25124 tcgameth site:cg15467646, B=0.06, L=0.47, H=0.43
25124 tcgameth site:cg17456100, B=0.04, L=0.28, H=0.26
25124 tcgameth site:cg24334174, B=0.87, L=0.92, H=0.91
25124 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25124 tcgaexp gene=LDLRAD2, entrez=401944, pos=chr1:22138758-22151714(+), B=490, L=915, M=505, H=384
25124 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305