DMR 25199 chr1:32409801-32410800 (1000bp)

DMR Stats
Positionchr1:32409801-32410800 (View on UCSC)
Width1000bp
Genomic Contextintergenic
Nearest GenesPTP4A2 (5812bp away)
ANODEV p-value4.11807130212e-07
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25199 chr1 32409262 32409851 wgEncodeRegTfbsClusteredV3 IKZF1 score:510, expCount:1, expNums:294, expScores:510, srow:93652
25199 chr1 32409845 32409858 phastConsElements100way lod=20 score:290, srow:131712
25199 chr1 32409861 32409870 phastConsElements100way lod=16 score:268, srow:131713
25199 chr1 32409401 32409916 wgEncodeRegTfbsClusteredV3 CEBPB score:236, expCount:1, expNums:85, expScores:236, srow:93656
25199 chr1 32409959 32409963 phastConsElements100way lod=16 score:268, srow:131714
25199 chr1 32409978 32409980 phastConsElements100way lod=16 score:268, srow:131715
25199 chr1 32409986 32409995 phastConsElements100way lod=38 score:354, srow:131716
25199 chr1 32410002 32410009 phastConsElements100way lod=29 score:327, srow:131717
25199 chr1 32409685 32410053 wgEncodeRegTfbsClusteredV3 PHF8 score:753, expCount:1, expNums:30, expScores:753, srow:93659
25199 chr1 32409773 32410057 wgEncodeRegTfbsClusteredV3 KDM5B score:614, expCount:1, expNums:31, expScores:614, srow:93662
25199 chr1 32410013 32410089 phastConsElements100way lod=306 score:560, srow:131718
25199 chr1 32410097 32410100 phastConsElements100way lod=17 score:274, srow:131719
25199 chr1 32410117 32410119 phastConsElements100way lod=13 score:247, srow:131720
25199 chr1 32409925 32410140 wgEncodeRegTfbsClusteredV3 MEF2A score:130, expCount:1, expNums:224, expScores:130, srow:93693
25199 chr1 32409928 32410177 wgEncodeRegTfbsClusteredV3 TEAD4 score:1000, expCount:2, expNums:160,240, expScores:297,1000, srow:93694
25199 chr1 32410173 32410181 phastConsElements100way lod=16 score:268, srow:131721
25199 chr1 32409859 32410188 wgEncodeRegTfbsClusteredV3 IRF4 score:164, expCount:1, expNums:92, expScores:164, srow:93671
25199 chr1 32408189 32410188 cpgShore — values(x.gr)[overs$srow, ]:1433
25199 chr1 32409922 32410191 wgEncodeRegTfbsClusteredV3 USF1 score:161, expCount:1, expNums:67, expScores:161, srow:93692
25199 chr1 32409761 32410196 wgEncodeRegTfbsClusteredV3 CHD1 score:156, expCount:1, expNums:287, expScores:156, srow:93661
25199 chr1 32409920 32410206 wgEncodeRegTfbsClusteredV3 SPI1 score:217, expCount:3, expNums:107,126,230, expScores:174,192,217, srow:93690
25199 chr1 32409969 32410212 wgEncodeRegTfbsClusteredV3 JUN score:122, expCount:1, expNums:480, expScores:122, srow:93707
25199 chr1 32409994 32410223 wgEncodeRegTfbsClusteredV3 FOSL1 score:132, expCount:1, expNums:219, expScores:132, srow:93718
25199 chr1 32410045 32410226 wgEncodeRegTfbsClusteredV3 CCNT2 score:423, expCount:1, expNums:476, expScores:423, srow:93726
25199 chr1 32409920 32410229 wgEncodeRegTfbsClusteredV3 GABPA score:283, expCount:2, expNums:166,220, expScores:163,283, srow:93689
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Omics Overlaps

Dmrid Omic Set Data Plot
25199 cellmeth_recounts PrEC: 33, LNCaP: 271, DU145: 4
25199 cellmeth_diffreps_PrECvsLNCaP A=29, B=205, Length=1000, Event=Up, log2FC=2.82, padj=0
25199 cellmeth_diffreps_PrECvsDU145 A=30, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.21014621758047e-08
25199 cellmeth_diffreps_PrECvsDU145 A=14, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000506195974236337
25199 cellmeth_diffreps_PrECvsDU145 A=28, B=5, Length=200, Event=Down, log2FC=-2.49, padj=0.00112599535425937
25199 cellmeth_diffreps_LNCaPvsDU145 A=244.81, B=7.48, Length=1280, Event=Down, log2FC=-5.03, padj=0
25199 cellexp id=ENSG00000184007, name=PTP4A2, PrEC=10620, str=6229, LNCaP=6667, str=7060, DU145=21329, str=22046
25199 tcgameth site:cg00925616, B=0.32, L=0.65, H=0.64
25199 tcgameth site:cg04881103, B=0.23, L=0.53, H=0.48
25199 tcgameth site:cg11756095, B=0.25, L=0.63, H=0.6
25199 tcgameth site:cg17942618, B=0.7, L=0.74, H=0.73
25199 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305