DMR 25210 chr1:33772101-33773000 (900bp)

DMR Stats
Positionchr1:33772101-33773000 (View on UCSC)
Width900bp
Genomic Context3' end
Nearest GenesA3GALT2 (0bp away)
ANODEV p-value0.000887429651493
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25210 A3GALT2 613 uc031plq.1 chr1 33772367 33786699 - 634 70.44 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (70.44) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25210 chr1 33770147 33772146 cpgShore — values(x.gr)[overs$srow, ]:1514
25210 chr1 33772374 33772377 phastConsElements100way lod=18 score:280, srow:138797
25210 chr1 33772386 33772399 tfbsConsSites V$ROAZ_01 score:774, zScore:2.2, srow:72240
25210 chr1 33772386 33772411 phastConsElements100way lod=55 score:390, srow:138798
25210 chr1 33772420 33772426 phastConsElements100way lod=26 score:316, srow:138799
25210 chr1 33772436 33772440 phastConsElements100way lod=21 score:295, srow:138800
25210 chr1 33772448 33772462 phastConsElements100way lod=107 score:456, srow:138801
25210 chr1 33772464 33772489 phastConsElements100way lod=199 score:517, srow:138802
25210 chr1 33772496 33772529 phastConsElements100way lod=282 score:552, srow:138803
25210 chr1 33772533 33772537 phastConsElements100way lod=51 score:383, srow:138804
25210 chr1 33772545 33772546 phastConsElements100way lod=17 score:274, srow:138805
25210 chr1 33772552 33772555 phastConsElements100way lod=41 score:361, srow:138806
25210 chr1 33772574 33772579 phastConsElements100way lod=37 score:351, srow:138807
25210 chr1 33772584 33772588 phastConsElements100way lod=32 score:337, srow:138808
25210 chr1 33772270 33772593 wgEncodeRegTfbsClusteredV3 BACH1 score:180, expCount:1, expNums:341, expScores:180, srow:99166
25210 chr1 33772593 33772597 phastConsElements100way lod=23 score:304, srow:138809
25210 chr1 33772605 33772618 phastConsElements100way lod=43 score:366, srow:138810
25210 chr1 33772623 33772624 phastConsElements100way lod=23 score:304, srow:138811
25210 chr1 33772612 33772625 tfbsConsSites V$RREB1_01 score:812, zScore:1.75, srow:72242
25210 chr1 33772598 33772626 tfbsConsSites V$MYOGNF1_01 score:756, zScore:2.03, srow:72241
25210 chr1 33772626 33772645 phastConsElements100way lod=171 score:502, srow:138812
25210 chr1 33772659 33772659 phastConsElements100way lod=14 score:255, srow:138813
25210 chr1 33772665 33772666 phastConsElements100way lod=24 score:308, srow:138814
25210 chr1 33772671 33772672 phastConsElements100way lod=25 score:312, srow:138815
25210 chr1 33772683 33772687 phastConsElements100way lod=44 score:368, srow:138816
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  • 25 of 67 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25210 cellmeth_recounts PrEC: 43, LNCaP: 5495, DU145: 41
25210 cellmeth_diffreps_PrECvsLNCaP A=75, B=4509, Length=1400, Event=Up, log2FC=5.91, padj=0
25210 cellmeth_diffreps_PrECvsDU145 A=24, B=4, Length=280, Event=Down, log2FC=-2.58, padj=0.00252994212801597
25210 cellmeth_diffreps_LNCaPvsDU145 A=4840.64, B=36.48, Length=1600, Event=Down, log2FC=-7.05, padj=0
25210 cellexp id=ENSG00000184389, name=A3GALT2, PrEC=1, str=0, LNCaP=3, str=1, DU145=0, str=1
25210 cellexp id=ENSG00000225313, name=RP11-415J8.3, PrEC=13, str=103, LNCaP=12, str=12, DU145=9, str=11
25210 tcgameth site:cg00069002, B=0.39, L=0.52, H=0.51
25210 tcgameth site:cg08864344, B=0.45, L=0.65, H=0.63
25210 tcgameth site:cg13870102, B=0.26, L=0.46, H=0.46
25210 tcgameth site:cg18964375, B=0.72, L=0.83, H=0.81
25210 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305