DMR 25226 chr1:36786651-36787000 (350bp)

DMR Stats
Positionchr1:36786651-36787000 (View on UCSC)
Width350bp
Genomic Context3' end
Nearest GenesSH3D21 (0bp away)
ANODEV p-value0.00465716425097
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25226 SH3D21 653 uc010oia.1 chr1 36771994 36787379 + 350 100.0 0.19 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (1.71), E16 (98.29) 100.0
25226 SH3D21 653 uc010oib.1 chr1 36772708 36787379 + 350 100.0 0.45 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (1.71), E13 (98.29) 100.0
25226 SH3D21 653 uc010oic.1 chr1 36772708 36790484 + 350 100.0 0.19 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (1.71), E9 (44), I9 (54.57), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25226 chr1 36786655 36786657 phastConsElements100way lod=17 score:274, srow:154459
25226 chr1 36786342 36786665 wgEncodeRegTfbsClusteredV3 ZEB1 score:124, expCount:1, expNums:121, expScores:124, srow:104381
25226 chr1 36786720 36786720 cosmic COSM1342300 srow:23916
25226 chr1 36786720 36786720 cosmic COSM1342301 srow:23917
25226 chr1 36786207 36786730 wgEncodeRegTfbsClusteredV3 HDAC1 score:221, expCount:1, expNums:26, expScores:221, srow:104380
25226 chr1 36786812 36786815 phastConsElements100way lod=23 score:304, srow:154460
25226 chr1 36786841 36786847 phastConsElements100way lod=13 score:247, srow:154461
25226 chr1 36786853 36786861 phastConsElements100way lod=52 score:385, srow:154462
25226 chr1 36786853 36786862 tfbsConsSites V$SP1_01 score:976, zScore:2.37, srow:80883
25226 chr1 36786911 36786926 tfbsConsSites V$TAL1ALPHAE47_01 score:890, zScore:2.15, srow:80884
25226 chr1 36786845 36786935 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:473, expCount:1, expNums:232, expScores:473, srow:104419
25226 chr1 36786922 36786937 tfbsConsSites V$ARNT_01 score:836, zScore:1.7, srow:80885
25226 chr1 36786821 36786942 wgEncodeRegTfbsClusteredV3 ELF1 score:236, expCount:1, expNums:217, expScores:236, srow:104417
25226 chr1 36786937 36786943 tfbsConsSites V$EN1_01 score:988, zScore:2.09, srow:80887
25226 chr1 36786912 36786943 phastConsElements100way lod=156 score:493, srow:154463
25226 chr1 36786936 36786944 tfbsConsSites V$HOXA3_01 score:928, zScore:1.84, srow:80886
25226 chr1 36786945 36786954 phastConsElements100way lod=24 score:308, srow:154464
25226 chr1 36786870 36786976 wgEncodeRegTfbsClusteredV3 REST score:399, expCount:1, expNums:226, expScores:399, srow:104422
25226 chr1 36786962 36786977 tfbsConsSites V$MEF2_01 score:786, zScore:2.31, srow:80888
25226 chr1 36786963 36786978 tfbsConsSites V$RSRFC4_01 score:853, zScore:2.59, srow:80889
25226 chr1 36786965 36786987 phastConsElements100way lod=87 score:436, srow:154465
25226 chr1 36786798 36786988 wgEncodeRegTfbsClusteredV3 ETS1 score:422, expCount:1, expNums:218, expScores:422, srow:104412
25226 chr1 36786834 36786989 wgEncodeRegTfbsClusteredV3 TCF12 score:413, expCount:1, expNums:159, expScores:413, srow:104418
25226 chr1 36786975 36786990 tfbsConsSites V$TAL1ALPHAE47_01 score:863, zScore:1.72, srow:80890
25226 chr1 36786980 36786993 tfbsConsSites V$RREB1_01 score:810, zScore:1.71, srow:80891
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  • 25 of 68 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25226 cellmeth_recounts PrEC: 98, LNCaP: 142, DU145: 13
25226 cellmeth_diffreps_PrECvsLNCaP A=259, B=153, Length=340, Event=Down, log2FC=-0.76, padj=8.5206330086452e-06
25226 cellmeth_diffreps_PrECvsDU145 A=603, B=34, Length=1500, Event=Down, log2FC=-4.15, padj=0
25226 cellmeth_diffreps_LNCaPvsDU145 A=415.86, B=31.8, Length=1460, Event=Down, log2FC=-3.71, padj=0
25226 cellexp id=ENSG00000214193, name=SH3D21, PrEC=1236, str=4923, LNCaP=385, str=211, DU145=607, str=584
25226 tcgameth site:cg02993069, B=0.51, L=0.59, H=0.55
25226 tcgaexp gene=SH3D21, entrez=79729, pos=chr1:36771994-36790484(+), B=219, L=278, M=316, H=377
25226 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305