DMR Stats | |
---|---|
Position | chr1:94146151-94146550 (View on UCSC) |
Width | 400bp |
Genomic Context | promoter |
Nearest Genes | BCAR3 (0bp away) |
ANODEV p-value | 2.23247011035e-05 |
Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
25475 | BCAR3 | 1171 | uc001dpz.4 | chr1 | 94027343 | 94146926 | - | 400 | 100.0 | 0.69 | 0 | 31.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
25475 | BCAR3 | 1171 | uc001dqa.4 | chr1 | 94027343 | 94147394 | - | 400 | 100.0 | 0.69 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
25475 | BCAR3 | 1171 | uc001dqb.4 | chr1 | 94027343 | 94312706 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
25475 | chr1 | 94146155 | 94146160 | phastConsElements100way | lod=14 | score:255, srow:398566 |
25475 | chr1 | 94146164 | 94146177 | tfbsConsSites | V$ROAZ_01 | score:739, zScore:1.64, srow:224466 |
25475 | chr1 | 94146166 | 94146179 | phastConsElements100way | lod=36 | score:348, srow:398567 |
25475 | chr1 | 94146184 | 94146194 | phastConsElements100way | lod=26 | score:316, srow:398568 |
25475 | chr1 | 94145586 | 94146195 | wgEncodeRegDnaseClusteredV2 | 71 | score:1000, srow:56010 |
25475 | chr1 | 94146209 | 94146221 | tfbsConsSites | V$ZID_01 | score:869, zScore:2.07, srow:224467 |
25475 | chr1 | 94144322 | 94146321 | cpgShore | — | values(x.gr)[overs$srow, ]:2447 |
25475 | chr1 | 94146550 | 94146563 | tfbsConsSites | V$FAC1_01 | score:847, zScore:1.93, srow:224468 |
25475 | chr1 | 94146260 | 94146570 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:11, expNums:108,149,193,231,264,280,310,355,405,448,466, expScores:319,902,820,300,1000,239,114,520,718,257,764, srow:195212 |
25475 | chr1 | 94146280 | 94146583 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:632, expCount:3, expNums:313,408,535, expScores:181,632,95, srow:195214 |
25475 | chr1 | 94146297 | 94146592 | wgEncodeRegTfbsClusteredV3 | GATA3 | score:211, expCount:1, expNums:272, expScores:211, srow:195219 |
25475 | chr1 | 94146297 | 94146600 | wgEncodeRegTfbsClusteredV3 | BRCA1 | score:134, expCount:1, expNums:374, expScores:134, srow:195220 |
25475 | chr1 | 94146247 | 94146616 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:134, expCount:1, expNums:380, expScores:134, srow:195211 |
25475 | chr1 | 94146215 | 94146618 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:148, expCount:1, expNums:397, expScores:148, srow:195207 |
25475 | chr1 | 94146222 | 94146619 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:1000, expCount:1, expNums:368, expScores:1000, srow:195208 |
25475 | chr1 | 94146292 | 94146619 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:423, expCount:2, expNums:361,552, expScores:423,251, srow:195216 |
25475 | chr1 | 94146293 | 94146622 | wgEncodeRegTfbsClusteredV3 | RFX5 | score:150, expCount:1, expNums:406, expScores:150, srow:195217 |
25475 | chr1 | 94146245 | 94146635 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:94, expNums:2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,680,682,683,684,685,686,687,688,689, expScores:691,941,783,528,360,590,567,362,719,340,738,877,472,731,243,239,560,473,414,439,131,660,944,553,1000,982,1000,786,1000,1000,1000,1000,1000,719,897,216,476,815,1000,1000,1000,876,1000,1000,719,359,1000,959,558,1000,1000,1000,489,1000,136,646,991,675,701,1000,618,618,342,889,699,1000,598,978,1000,567,1000,424,357,620,425,383,1000,923,1000,953,550,656,735,593,396,313,1000,756,315,674,1000,788,581,194, srow:195209 |
25475 | chr1 | 94146211 | 94146646 | wgEncodeRegTfbsClusteredV3 | UBTF | score:184, expCount:1, expNums:549, expScores:184, srow:195206 |
25475 | chr1 | 94145797 | 94146647 | oreganno | OREG0013605 | id:OREG0013605, srow:1057 |
25475 | chr1 | 94146007 | 94146666 | wgEncodeRegTfbsClusteredV3 | SMARCB1 | score:244, expCount:1, expNums:391, expScores:244, srow:195203 |
25475 | chr1 | 94146162 | 94146681 | wgEncodeRegTfbsClusteredV3 | ATF2 | score:229, expCount:1, expNums:79, expScores:229, srow:195205 |
25475 | chr1 | 94146246 | 94146685 | wgEncodeRegTfbsClusteredV3 | CBX3 | score:277, expCount:1, expNums:211, expScores:277, srow:195210 |
25475 | chr1 | 94146330 | 94146685 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:143, expCount:1, expNums:260, expScores:143, srow:195223 |
25475 | chr1 | 94146402 | 94146687 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:358, expCount:2, expNums:378,462, expScores:358,218, srow:195224 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
25475 | cellmeth_recounts | PrEC: 0, LNCaP: 118, DU145: 0 | |
25475 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=160, Length=940, Event=Up, log2FC=Inf, padj=0 | |
25475 | cellmeth_diffreps_LNCaPvsDU145 | A=171.05, B=0, Length=940, Event=Down, log2FC=-Inf, padj=0 | |
25475 | cellexp | id=ENSG00000137936, name=BCAR3, PrEC=10989, str=8783, LNCaP=486, str=350, DU145=5021, str=6953 | |
25475 | tcgameth | site:cg18060199, B=0.23, L=0.56, H=0.54 | |
25475 | tcgaexp | gene=BCAR3, entrez=8412, pos=chr1:94027343-94312706(-), B=1309, L=868, M=746, H=673 | |
25475 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |