DMR 26174 chr2:45171251-45172300 (1050bp)

DMR Stats
Positionchr2:45171251-45172300 (View on UCSC)
Width1050bp
Genomic Context3' end
Nearest GenesSIX3 (0bp away)
ANODEV p-value2.00551284512e-06
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26174 SIX3 16293 uc002run.2 chr2 45169037 45173216 + 1050 100.0 0.09 0 0.0 E1 (0), I1 (43.43), E2 (56.57) 8.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26174 chr2 45170931 45171251 wgEncodeRegTfbsClusteredV3 CTCF score:362, expCount:2, expNums:645,687, expScores:329,362, srow:2164555
26174 chr2 45171378 45171391 tfbsConsSites V$RREB1_01 score:809, zScore:1.7, srow:2615664
26174 chr2 45171408 45171631 wgEncodeRegTfbsClusteredV3 CTCF score:144, expCount:1, expNums:687, expScores:144, srow:2164557
26174 chr2 45171689 45171691 phastConsElements100way lod=13 score:247, srow:4513291
26174 chr2 45171705 45171717 tfbsConsSites V$ZID_01 score:942, zScore:3.36, srow:2615665
26174 chr2 45171735 45171762 tfbsConsSites V$PAX5_02 score:772, zScore:1.84, srow:2615666
26174 chr2 45171751 45171768 tfbsConsSites V$AP4_01 score:812, zScore:1.68, srow:2615670
26174 chr2 45171749 45171769 tfbsConsSites V$PAX4_01 score:808, zScore:1.84, srow:2615668
26174 chr2 45171744 45171771 tfbsConsSites V$PAX5_01 score:780, zScore:1.95, srow:2615667
26174 chr2 45171750 45171771 tfbsConsSites V$HEN1_01 score:772, zScore:1.66, srow:2615669
26174 chr2 45171764 45171781 tfbsConsSites V$AHR_01 score:769, zScore:1.74, srow:2615672
26174 chr2 45170914 45171782 wgEncodeRegTfbsClusteredV3 CHD1 score:438, expCount:1, expNums:4, expScores:272, srow:2164554
26174 chr2 45171763 45171790 tfbsConsSites V$PAX5_01 score:782, zScore:1.98, srow:2615671
26174 chr2 45171773 45171794 tfbsConsSites V$TCF11MAFG_01 score:754, zScore:1.9, srow:2615673
26174 chr2 45171697 45171808 phastConsElements100way lod=942 score:671, srow:4513292
26174 chr2 45171827 45171838 tfbsConsSites V$CREBP1_Q2 score:840, zScore:1.7, srow:2615676
26174 chr2 45171827 45171838 tfbsConsSites V$CREB_Q2 score:868, zScore:2.07, srow:2615677
26174 chr2 45171826 45171839 tfbsConsSites V$ATF_01 score:827, zScore:1.74, srow:2615675
26174 chr2 45171841 45171841 cosmic COSM300499 srow:645047
26174 chr2 45171822 45171842 tfbsConsSites V$NRSF_01 score:712, zScore:1.75, srow:2615674
26174 chr2 45171622 45171865 wgEncodeRegTfbsClusteredV3 REST score:209, expCount:1, expNums:144, expScores:209, srow:2164559
26174 chr2 45171878 45171878 cosmic COSM1306822 srow:645048
26174 chr2 45169506 45171884 cpgIsland CpG: 171 length:2379, cpgNum:171, gcNum:1484, perCpg:14.4, perGc:62.4, obsExp:0.74, srow:14933
26174 chr2 45171883 45171896 tfbsConsSites V$OCT1_06 score:929, zScore:3.05, srow:2615678
26174 chr2 45171810 45171920 phastConsElements100way lod=1083 score:685, srow:4513293
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Omics Overlaps

Dmrid Omic Set Data Plot
26174 cellmeth_recounts PrEC: 63, LNCaP: 515, DU145: 78
26174 cellmeth_diffreps_PrECvsLNCaP A=63, B=375, Length=780, Event=Up, log2FC=2.57, padj=0
26174 cellmeth_diffreps_PrECvsDU145 A=42, B=11, Length=340, Event=Down, log2FC=-1.93, padj=0.000523743958488681
26174 cellmeth_diffreps_PrECvsDU145 A=2, B=24, Length=260, Event=Up, log2FC=3.58, padj=0.000159268381260165
26174 cellmeth_diffreps_LNCaPvsDU145 A=422.27, B=45.84, Length=920, Event=Down, log2FC=-3.2, padj=0
26174 cellexp id=ENSG00000138083, name=SIX3, PrEC=0, str=2, LNCaP=7, str=3, DU145=246, str=65
26174 tcgameth site:cg00097146, B=0.19, L=0.58, H=0.55
26174 tcgameth site:cg02120584, B=0.51, L=0.71, H=0.68
26174 tcgameth site:cg02649597, B=0.24, L=0.52, H=0.51
26174 tcgameth site:cg03717442, B=0.8, L=0.87, H=0.87
26174 tcgaexp gene=SIX3, entrez=6496, pos=chr2:45169037-45173216(+), B=0, L=0, M=1, H=2