DMR 26379 chr2:105473001-105473300 (300bp)
| DMR Stats | |
|---|---|
| Position | chr2:105473001-105473300 (View on UCSC) |
| Width | 300bp |
| Genomic Context | 3' end |
| Nearest Genes | POU3F3 (0bp away) |
| ANODEV p-value | 0.000287676041294 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26379 | POU3F3 | 16779 | uc010ywg.2 | chr2 | 105471969 | 105473471 | + | 300 | 100.0 | 0.05 | 0 | 0.0 | E1 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26379 | chr2 | 105472926 | 105473005 | phastConsElements100way | lod=1012 | score:678, srow:4710310 |
| 26379 | chr2 | 105473006 | 105473006 | cosmic | COSM121614 | srow:664968 |
| 26379 | chr2 | 105473009 | 105473009 | cosmic | COSM1398563 | srow:664969 |
| 26379 | chr2 | 105473018 | 105473018 | cosmic | COSM1004731 | srow:664970 |
| 26379 | chr2 | 105473019 | 105473019 | cosmic | COSM328844 | srow:664971 |
| 26379 | chr2 | 105472992 | 105473021 | tfbsConsSites | V$PAX4_04 | score:729, zScore:1.75, srow:2723345 |
| 26379 | chr2 | 105473021 | 105473021 | cosmic | COSM714910 | srow:664972 |
| 26379 | chr2 | 105473034 | 105473034 | cosmic | COSM1398564 | srow:664973 |
| 26379 | chr2 | 105473035 | 105473035 | cosmic | COSM1398565 | srow:664974 |
| 26379 | chr2 | 105473036 | 105473036 | cosmic | COSM80375 | srow:664975 |
| 26379 | chr2 | 105473049 | 105473049 | cosmic | COSM322756 | srow:664976 |
| 26379 | chr2 | 105473037 | 105473052 | tfbsConsSites | V$GRE_C | score:809, zScore:1.68, srow:2723346 |
| 26379 | chr2 | 105473057 | 105473057 | cosmic | COSM1004732 | srow:664977 |
| 26379 | chr2 | 105473041 | 105473058 | tfbsConsSites | V$CMYB_01 | score:815, zScore:2.14, srow:2723347 |
| 26379 | chr2 | 105473061 | 105473061 | cosmic | COSM1004733 | srow:664978 |
| 26379 | chr2 | 105473007 | 105473101 | phastConsElements100way | lod=1130 | score:689, srow:4710311 |
| 26379 | chr2 | 105473102 | 105473102 | cosmic | COSM1004734 | srow:664979 |
| 26379 | chr2 | 105473110 | 105473119 | tfbsConsSites | V$NKX22_01 | score:880, zScore:1.78, srow:2723348 |
| 26379 | chr2 | 105473111 | 105473120 | tfbsConsSites | V$HMX1_01 | score:840, zScore:2.18, srow:2723349 |
| 26379 | chr2 | 105473129 | 105473129 | cosmic | COSM1004735 | srow:664980 |
| 26379 | chr2 | 105473159 | 105473169 | tfbsConsSites | V$EVI1_02 | score:883, zScore:2.4, srow:2723350 |
| 26379 | chr2 | 105473170 | 105473170 | cosmic | COSM1398566 | srow:664981 |
| 26379 | chr2 | 105473104 | 105473170 | phastConsElements100way | lod=824 | score:658, srow:4710312 |
| 26379 | chr2 | 105473172 | 105473173 | phastConsElements100way | lod=35 | score:345, srow:4710313 |
| 26379 | chr2 | 105473175 | 105473175 | cosmic | COSM1731864 | srow:664982 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26379 | cellmeth_recounts | PrEC: 1, LNCaP: 1155, DU145: 33 |  |
| 26379 | cellmeth_diffreps_PrECvsLNCaP | A=34, B=3498, Length=4060, Event=Up, log2FC=6.68, padj=0 |  |
| 26379 | cellmeth_diffreps_PrECvsDU145 | A=1, B=24, Length=300, Event=Up, log2FC=4.58, padj=2.0670567223746e-05 |  |
| 26379 | cellmeth_diffreps_LNCaPvsDU145 | A=3737.38, B=115.06, Length=4000, Event=Down, log2FC=-5.02, padj=0 |  |
| 26379 | cellexp | id=ENSG00000198914, name=POU3F3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 26379 | cellexp | id=ENSG00000269707, name=RP11-13J10.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 26379 | tcgameth | site:cg16767916, B=0.42, L=0.61, H=0.59 |  |
| 26379 | tcgaexp | gene=POU3F3, entrez=5455, pos=chr2:105471969-105473471(+), B=252, L=0, M=1, H=1 |  |