DMR Stats | |
---|---|
Position | chr2:171572651-171573550 (View on UCSC) |
Width | 900bp |
Genomic Context | 3' end |
Nearest Genes | SP5 (0bp away) |
ANODEV p-value | 7.96121680583e-06 |
Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26543 | SP5 | 17256 | uc002uge.3 | chr2 | 171571857 | 171574498 | + | 900 | 100.0 | 0.41 | 0 | 0.0 | E1 (0), I1 (13.11), E2 (86.89) | 5.78 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
26543 | chr2 | 171572664 | 171572668 | phastConsElements100way | lod=27 | score:320, srow:4941863 |
26543 | chr2 | 171572684 | 171572687 | phastConsElements100way | lod=18 | score:280, srow:4941864 |
26543 | chr2 | 171572235 | 171572690 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:149, expCount:1, expNums:195, expScores:149, srow:2326673 |
26543 | chr2 | 171572721 | 171572751 | phastConsElements100way | lod=73 | score:418, srow:4941865 |
26543 | chr2 | 171572763 | 171572788 | phastConsElements100way | lod=199 | score:517, srow:4941866 |
26543 | chr2 | 171572781 | 171572801 | tfbsConsSites | V$STAT1_01 | score:771, zScore:1.92, srow:2851574 |
26543 | chr2 | 171572782 | 171572801 | tfbsConsSites | V$P53_01 | score:697, zScore:2.09, srow:2851575 |
26543 | chr2 | 171572790 | 171572801 | tfbsConsSites | V$AREB6_03 | score:906, zScore:2.17, srow:2851576 |
26543 | chr2 | 171572790 | 171572809 | phastConsElements100way | lod=131 | score:476, srow:4941867 |
26543 | chr2 | 171572801 | 171572810 | tfbsConsSites | V$HMX1_01 | score:810, zScore:1.68, srow:2851578 |
26543 | chr2 | 171572798 | 171572816 | tfbsConsSites | V$AHRARNT_02 | score:820, zScore:2.59, srow:2851577 |
26543 | chr2 | 171572811 | 171572818 | phastConsElements100way | lod=72 | score:417, srow:4941868 |
26543 | chr2 | 171572822 | 171572822 | cosmic | COSM1613684 | srow:688230 |
26543 | chr2 | 171572836 | 171572836 | cosmic | COSM247534 | srow:688231 |
26543 | chr2 | 171572820 | 171572842 | phastConsElements100way | lod=202 | score:519, srow:4941869 |
26543 | chr2 | 171572844 | 171572848 | phastConsElements100way | lod=38 | score:354, srow:4941870 |
26543 | chr2 | 171572850 | 171572854 | phastConsElements100way | lod=47 | score:375, srow:4941871 |
26543 | chr2 | 171572856 | 171572857 | phastConsElements100way | lod=26 | score:316, srow:4941872 |
26543 | chr2 | 171572865 | 171572866 | phastConsElements100way | lod=14 | score:255, srow:4941873 |
26543 | chr2 | 171572873 | 171572886 | tfbsConsSites | V$ELK1_02 | score:866, zScore:1.73, srow:2851579 |
26543 | chr2 | 171572874 | 171572899 | phastConsElements100way | lod=154 | score:492, srow:4941874 |
26543 | chr2 | 171572904 | 171572911 | phastConsElements100way | lod=65 | score:407, srow:4941875 |
26543 | chr2 | 171572913 | 171572923 | phastConsElements100way | lod=68 | score:411, srow:4941876 |
26543 | chr2 | 171572925 | 171572937 | phastConsElements100way | lod=116 | score:464, srow:4941877 |
26543 | chr2 | 171572943 | 171572950 | phastConsElements100way | lod=58 | score:395, srow:4941878 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
26543 | cellmeth_recounts | PrEC: 101, LNCaP: 3185, DU145: 26 | |
26543 | cellmeth_diffreps_PrECvsLNCaP | A=402, B=4269, Length=2660, Event=Up, log2FC=3.41, padj=0 | |
26543 | cellmeth_diffreps_PrECvsDU145 | A=395, B=41, Length=1480, Event=Down, log2FC=-3.27, padj=0 | |
26543 | cellmeth_diffreps_LNCaPvsDU145 | A=4563.75, B=46.77, Length=2640, Event=Down, log2FC=-6.61, padj=0 | |
26543 | cellexp | id=ENSG00000204335, name=SP5, PrEC=4, str=0, LNCaP=2, str=0, DU145=98, str=73 | |
26543 | tcgameth | site:cg01042246, B=0.21, L=0.49, H=0.46 | |
26543 | tcgameth | site:cg01571735, B=0.14, L=0.51, H=0.47 | |
26543 | tcgameth | site:cg12045337, B=0.15, L=0.45, H=0.39 | |
26543 | tcgameth | site:cg18798922, B=0.11, L=0.35, H=0.32 | |
26543 | tcgameth | site:cg24772753, B=0.47, L=0.71, H=0.7 | |
26543 | tcgaexp | gene=SP5, entrez=389058, pos=chr2:171571857-171574498(+), B=174, L=495, M=434, H=410 |