DMR 27108 chr3:124860351-124861100 (750bp)

DMR Stats
Positionchr3:124860351-124861100 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesSLC12A8 (0bp away)
ANODEV p-value3.34240443869e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27108 SLC12A8 20639 uc003ehv.4 chr3 124801480 124931609 - 750 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc003ehw.4 chr3 124801480 124998091 - 750 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc010hrz.1 chr3 124837613 124931609 - 750 100.0 0.35 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27108 chr3 124860406 124860424 phastConsElements100way lod=20 score:290, srow:6099486
27108 chr3 124860493 124860499 phastConsElements100way lod=21 score:295, srow:6099487
27108 chr3 124860374 124860506 wgEncodeRegTfbsClusteredV3 TCF12 score:336, expCount:1, expNums:116, expScores:336, srow:2874531
27108 chr3 124860509 124860510 phastConsElements100way lod=12 score:240, srow:6099488
27108 chr3 124860430 124860514 wgEncodeRegTfbsClusteredV3 IRF4 score:270, expCount:1, expNums:92, expScores:270, srow:2874534
27108 chr3 124860245 124860520 wgEncodeRegTfbsClusteredV3 ZBTB33 score:132, expCount:1, expNums:120, expScores:132, srow:2874509
27108 chr3 124860372 124860538 wgEncodeRegTfbsClusteredV3 SP1 score:276, expCount:1, expNums:112, expScores:276, srow:2874530
27108 chr3 124860371 124860546 wgEncodeRegTfbsClusteredV3 RXRA score:128, expCount:1, expNums:110, expScores:128, srow:2874529
27108 chr3 124860408 124860549 wgEncodeRegTfbsClusteredV3 EGR1 score:567, expCount:1, expNums:87, expScores:567, srow:2874532
27108 chr3 124860142 124860552 wgEncodeRegTfbsClusteredV3 EBF1 score:1000, expCount:2, expNums:86,292, expScores:1000,436, srow:2874502
27108 chr3 124860347 124860568 wgEncodeRegTfbsClusteredV3 BATF score:918, expCount:1, expNums:81, expScores:918, srow:2874525
27108 chr3 124858570 124860569 cpgShore — values(x.gr)[overs$srow, ]:34046
27108 chr3 124860331 124860570 wgEncodeRegTfbsClusteredV3 SPI1 score:249, expCount:1, expNums:126, expScores:249, srow:2874521
27108 chr3 124860246 124860575 wgEncodeRegTfbsClusteredV3 BHLHE40 score:430, expCount:1, expNums:284, expScores:430, srow:2874510
27108 chr3 124860352 124860591 wgEncodeRegTfbsClusteredV3 BCL11A score:658, expCount:1, expNums:82, expScores:658, srow:2874526
27108 chr3 124860291 124860600 wgEncodeRegTfbsClusteredV3 POU2F2 score:715, expCount:2, expNums:106,125, expScores:715,379, srow:2874516
27108 chr3 124860269 124860612 wgEncodeRegTfbsClusteredV3 YY1 score:190, expCount:1, expNums:119, expScores:190, srow:2874512
27108 chr3 124860359 124860622 wgEncodeRegTfbsClusteredV3 PAX5 score:675, expCount:4, expNums:100,101,122,129, expScores:343,675,135,274, srow:2874528
27108 chr3 124860326 124860631 wgEncodeRegTfbsClusteredV3 BCL3 score:339, expCount:1, expNums:83, expScores:339, srow:2874519
27108 chr3 124860345 124860633 wgEncodeRegTfbsClusteredV3 MEF2C score:1000, expCount:1, expNums:94, expScores:1000, srow:2874524
27108 chr3 124860415 124860638 wgEncodeRegTfbsClusteredV3 SRF score:436, expCount:1, expNums:113, expScores:436, srow:2874533
27108 chr3 124860341 124860642 wgEncodeRegTfbsClusteredV3 MEF2A score:1000, expCount:1, expNums:93, expScores:1000, srow:2874522
27108 chr3 124860625 124860644 phastConsElements100way lod=61 score:400, srow:6099489
27108 chr3 124860342 124860646 wgEncodeRegTfbsClusteredV3 ELF1 score:462, expCount:1, expNums:88, expScores:462, srow:2874523
27108 chr3 124860353 124860646 wgEncodeRegTfbsClusteredV3 TCF3 score:329, expCount:1, expNums:117, expScores:329, srow:2874527
  • Page 1 of 3
  • 25 of 68 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27108 cellmeth_recounts PrEC: 25, LNCaP: 285, DU145: 17
27108 cellmeth_diffreps_PrECvsLNCaP A=0, B=20, Length=280, Event=Up, log2FC=Inf, padj=7.90773854123128e-06
27108 cellmeth_diffreps_PrECvsLNCaP A=33, B=205, Length=640, Event=Up, log2FC=2.64, padj=0
27108 cellmeth_diffreps_LNCaPvsDU145 A=241.6, B=12.16, Length=940, Event=Down, log2FC=-4.31, padj=0
27108 cellexp id=ENSG00000221955, name=SLC12A8, PrEC=1006, str=1530, LNCaP=2202, str=1700, DU145=756, str=610
27108 tcgameth site:cg12788878, B=0.26, L=0.53, H=0.52
27108 tcgameth site:cg26107890, B=0.32, L=0.74, H=0.72
27108 tcgameth site:cg26125625, B=0.26, L=0.5, H=0.48
27108 tcgaexp gene=SLC12A8, entrez=84561, pos=chr3:124801480-124998091(-), B=668, L=1221, M=1227, H=1315