DMR 28342 chr5:172659001-172659750 (750bp)

DMR Stats
Positionchr5:172659001-172659750 (View on UCSC)
Width750bp
Genomic Context3' end
Nearest GenesNKX2-5 (0bp away)
ANODEV p-value2.08658349858e-10
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28342 NKX2-5 23471 uc003mcm.2 chr5 172659107 172662315 - 644 85.87 0.73 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc010jjt.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc011dfe.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28342 chr5 172656203 172659049 cpgShore — values(x.gr)[overs$srow, ]:38690
28342 chr5 172659091 172659102 phastConsElements100way lod=23 score:304, srow:7459419
28342 chr5 172659109 172659131 phastConsElements100way lod=83 score:431, srow:7459420
28342 chr5 172659123 172659135 tfbsConsSites V$NKX61_01 score:841, zScore:1.92, srow:4346037
28342 chr5 172659166 172659181 tfbsConsSites V$FREAC7_01 score:922, zScore:2.9, srow:4346038
28342 chr5 172659169 172659183 tfbsConsSites V$TATA_01 score:885, zScore:2.07, srow:4346039
28342 chr5 172659169 172659183 tfbsConsSites V$CDPCR3_01 score:806, zScore:2.08, srow:4346040
28342 chr5 172659148 172659185 phastConsElements100way lod=180 score:508, srow:7459421
28342 chr5 172659196 172659197 phastConsElements100way lod=16 score:268, srow:7459422
28342 chr5 172658386 172659210 wgEncodeRegDnaseClusteredV2 23 score:570, srow:989600
28342 chr5 172659214 172659224 phastConsElements100way lod=29 score:327, srow:7459423
28342 chr5 172659229 172659236 phastConsElements100way lod=26 score:316, srow:7459424
28342 chr5 172659119 172659264 wgEncodeRegTfbsClusteredV3 EGR1 score:466, expCount:1, expNums:216, expScores:466, srow:3383216
28342 chr5 172659333 172659335 phastConsElements100way lod=16 score:268, srow:7459425
28342 chr5 172659536 172659538 phastConsElements100way lod=14 score:255, srow:7459426
28342 chr5 172659555 172659586 phastConsElements100way lod=170 score:502, srow:7459427
28342 chr5 172659592 172659592 cosmic COSM396585 srow:992684
28342 chr5 172659588 172659594 phastConsElements100way lod=70 score:414, srow:7459428
28342 chr5 172659597 172659604 phastConsElements100way lod=70 score:414, srow:7459429
28342 chr5 172659606 172659607 phastConsElements100way lod=23 score:304, srow:7459430
28342 chr5 172659615 172659615 cosmic COSM322039 srow:992685
28342 chr5 172659594 172659621 tfbsConsSites V$PAX5_02 score:779, zScore:1.96, srow:4346041
28342 chr5 172659609 172659628 phastConsElements100way lod=86 score:434, srow:7459431
28342 chr5 172659630 172659640 phastConsElements100way lod=82 score:430, srow:7459432
28342 chr5 172659641 172659641 cosmic COSM367714 srow:992686
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  • 25 of 56 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28342 cellmeth_recounts PrEC: 11, LNCaP: 210, DU145: 44
28342 cellmeth_diffreps_PrECvsLNCaP A=9, B=343, Length=1160, Event=Up, log2FC=5.25, padj=0
28342 cellmeth_diffreps_PrECvsDU145 A=0, B=20, Length=360, Event=Up, log2FC=Inf, padj=1.02756470669418e-05
28342 cellmeth_diffreps_LNCaPvsDU145 A=393.41, B=42.09, Length=1400, Event=Down, log2FC=-3.22, padj=0
28342 cellexp id=ENSG00000183072, name=NKX2-5, PrEC=0, str=0, LNCaP=1, str=0, DU145=41, str=76
28342 tcgameth site:cg07798980, B=0.48, L=0.62, H=0.6
28342 tcgameth site:cg19923650, B=0.08, L=0.31, H=0.42
28342 tcgaexp gene=NKX2-5, entrez=1482, pos=chr5:172659107-172662315(-), B=1, L=0, M=5, H=27