DMR 30192 chr9:117501-118300 (800bp)

DMR Stats
Positionchr9:117501-118300 (View on UCSC)
Width800bp
Genomic Contextpromoter
Nearest GenesFOXD4 (0bp away)
ANODEV p-value1.52478218464e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30192 FOXD4 29107 uc003zfz.4 chr9 116231 118417 - 800 100.0 0.06 0 47.88 E1 (100) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30192 chr9 117506 117506 cosmic COSM455225 srow:1177958
30192 chr9 117506 117506 cosmic COSM455226 srow:1177959
30192 chr9 117506 117507 phastConsElements100way lod=16 score:268, srow:9110741
30192 chr9 117509 117510 phastConsElements100way lod=16 score:268, srow:9110742
30192 chr9 117513 117530 phastConsElements100way lod=116 score:464, srow:9110743
30192 chr9 117533 117534 phastConsElements100way lod=24 score:308, srow:9110744
30192 chr9 117536 117537 phastConsElements100way lod=27 score:320, srow:9110745
30192 chr9 117539 117564 phastConsElements100way lod=287 score:554, srow:9110746
30192 chr9 117546 117565 tfbsConsSites V$P53_01 score:676, zScore:1.73, srow:5283205
30192 chr9 117552 117567 tfbsConsSites V$GRE_C score:810, zScore:1.7, srow:5283206
30192 chr9 117569 117570 phastConsElements100way lod=15 score:262, srow:9110747
30192 chr9 117572 117572 cosmic COSM1104432 srow:1177960
30192 chr9 117572 117572 cosmic COSM1104433 srow:1177961
30192 chr9 117574 117574 cosmic COSM1459146 srow:1177962
30192 chr9 117574 117574 cosmic COSM1459147 srow:1177963
30192 chr9 117556 117575 tfbsConsSites V$P53_01 score:722, zScore:2.53, srow:5283207
30192 chr9 117569 117578 tfbsConsSites V$SP1_01 score:956, zScore:2.11, srow:5283209
30192 chr9 117579 117579 cosmic COSM1330821 srow:1177964
30192 chr9 117579 117579 cosmic COSM1330822 srow:1177965
30192 chr9 117557 117585 tfbsConsSites V$MYOGNF1_01 score:737, zScore:1.71, srow:5283208
30192 chr9 117573 117588 tfbsConsSites V$ARP1_01 score:795, zScore:1.79, srow:5283211
30192 chr9 117571 117591 tfbsConsSites V$PPARG_01 score:741, zScore:1.94, srow:5283210
30192 chr9 117575 117603 phastConsElements100way lod=339 score:570, srow:9110748
30192 chr9 117590 117604 tfbsConsSites V$ISRE_01 score:781, zScore:1.68, srow:5283212
30192 chr9 117599 117610 tfbsConsSites V$EGR1_01 score:841, zScore:1.88, srow:5283213
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  • 25 of 99 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30192 cellmeth_recounts PrEC: 24, LNCaP: 193, DU145: 15
30192 cellmeth_diffreps_PrECvsLNCaP A=2, B=89, Length=760, Event=Up, log2FC=5.48, padj=0
30192 cellmeth_diffreps_PrECvsLNCaP A=24, B=56, Length=260, Event=Up, log2FC=1.22, padj=0.008870036705605
30192 cellmeth_diffreps_PrECvsDU145 A=25, B=4, Length=340, Event=Down, log2FC=-2.64, padj=0.00160404022456948
30192 cellmeth_diffreps_PrECvsDU145 A=28, B=3, Length=320, Event=Down, log2FC=-3.22, padj=8.63344400735211e-05
30192 cellmeth_diffreps_LNCaPvsDU145 A=192.43, B=12.16, Length=1280, Event=Down, log2FC=-3.98, padj=0
30192 cellexp id=ENSG00000170122, name=FOXD4, PrEC=3, str=21, LNCaP=465, str=274, DU145=47, str=57
30192 tcgameth site:cg18016181, B=0.24, L=0.58, H=0.59
30192 tcgameth site:cg25391162, B=0.5, L=0.64, H=0.64
30192 tcgaexp gene=FOXD4, entrez=2298, pos=chr9:116231-118417(-), B=18, L=37, M=34, H=39