DMR 30218 chr9:6412301-6412850 (550bp)

DMR Stats
Positionchr9:6412301-6412850 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesUHRF2 (300bp away)
ANODEV p-value7.36160539934e-10
FrequenciesBenign: 3.0 (42.86%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30218 chr9 6410354 6412353 cpgShore — values(x.gr)[overs$srow, ]:47658
30218 chr9 6412206 6412355 wgEncodeRegDnaseClusteredV2 3 score:161, srow:1200644
30218 chr9 6412558 6412655 wgEncodeRegTfbsClusteredV3 ELF1 score:199, expCount:1, expNums:88, expScores:199, srow:4120169
30218 chr9 6412473 6412712 wgEncodeRegTfbsClusteredV3 EGR1 score:154, expCount:1, expNums:87, expScores:154, srow:4120162
30218 chr9 6412718 6412727 tfbsConsSites V$USF_Q6 score:952, zScore:2.58, srow:5297835
30218 chr9 6412772 6412792 tfbsConsSites V$STAT3_01 score:748, zScore:1.66, srow:5297836
30218 chr9 6412792 6412796 phastConsElements100way lod=16 score:268, srow:9133871
30218 chr9 6412503 6412832 wgEncodeRegTfbsClusteredV3 BHLHE40 score:291, expCount:1, expNums:284, expScores:291, srow:4120167
30218 chr9 6412586 6412841 wgEncodeRegTfbsClusteredV3 ZBTB33 score:125, expCount:1, expNums:246, expScores:125, srow:4120172
30218 chr9 6412498 6412853 wgEncodeRegTfbsClusteredV3 BCL3 score:175, expCount:1, expNums:83, expScores:175, srow:4120165
30218 chr9 6412382 6412865 wgEncodeRegTfbsClusteredV3 SETDB1 score:146, expCount:1, expNums:533, expScores:146, srow:4120160
30218 chr9 6412519 6412890 wgEncodeRegTfbsClusteredV3 MAX score:287, expCount:3, expNums:352,460,576, expScores:167,213,287, srow:4120168
30218 chr9 6412456 6412895 wgEncodeRegTfbsClusteredV3 CBX3 score:292, expCount:1, expNums:211, expScores:292, srow:4120161
30218 chr9 6412089 6412964 wgEncodeRegTfbsClusteredV3 RBBP5 score:282, expCount:1, expNums:8, expScores:212, srow:4120157
30218 chr9 6412636 6413005 wgEncodeRegTfbsClusteredV3 RELA score:369, expCount:1, expNums:325, expScores:369, srow:4120173
30218 chr9 6412816 6413008 wgEncodeRegTfbsClusteredV3 NFIC score:453, expCount:1, expNums:97, expScores:453, srow:4120184
30218 chr9 6412661 6413024 wgEncodeRegTfbsClusteredV3 ELK1 score:186, expCount:1, expNums:293, expScores:186, srow:4120175
30218 chr9 6412793 6413072 wgEncodeRegTfbsClusteredV3 BCL11A score:141, expCount:1, expNums:82, expScores:141, srow:4120181
30218 chr9 6412717 6413075 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:1000, srow:4120177
30218 chr9 6412496 6413091 wgEncodeRegTfbsClusteredV3 NFATC1 score:274, expCount:1, expNums:96, expScores:274, srow:4120164
30218 chr9 6412810 6413099 wgEncodeRegTfbsClusteredV3 MEF2A score:177, expCount:1, expNums:93, expScores:177, srow:4120183
30218 chr9 6412487 6413116 wgEncodeRegTfbsClusteredV3 STAT5A score:294, expCount:1, expNums:114, expScores:294, srow:4120163
30218 chr9 6412793 6413139 wgEncodeRegTfbsClusteredV3 EGR1 score:461, expCount:3, expNums:87,138,216, expScores:461,150,228, srow:4120182
30218 chr9 6412640 6413155 wgEncodeRegTfbsClusteredV3 CEBPB score:407, expCount:3, expNums:85,378,477, expScores:216,407,173, srow:4120174
30218 chr9 6412720 6413202 wgEncodeRegTfbsClusteredV3 EP300 score:286, expCount:3, expNums:145,304,519, expScores:156,286,203, srow:4120178
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Omics Overlaps

Dmrid Omic Set Data Plot
30218 cellmeth_recounts PrEC: 39, LNCaP: 302, DU145: 35
30218 cellmeth_diffreps_PrECvsLNCaP A=48, B=233, Length=640, Event=Up, log2FC=2.28, padj=0
30218 cellmeth_diffreps_PrECvsDU145 A=58, B=17, Length=380, Event=Down, log2FC=-1.77, padj=7.26627788439946e-05
30218 cellmeth_diffreps_LNCaPvsDU145 A=264.05, B=25.26, Length=740, Event=Down, log2FC=-3.39, padj=0
30218 tcgameth site:cg24119045, B=0.08, L=0.27, H=0.23