DMR 32089 chr12:48577851-48578800 (950bp)
| DMR Stats | |
|---|---|
| Position | chr12:48577851-48578800 (View on UCSC) |
| Width | 950bp |
| Genomic Context | promoter |
| Nearest Genes | C12orf68 (0bp away) |
| ANODEV p-value | 7.4683764549e-10 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32089 | C12orf68 | 6343 | uc001rrj.2 | chr12 | 48577366 | 48579709 | + | 950 | 100.0 | 2.52 | 0 | 1.58 | E1 (100) | 9.58 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32089 | chr12 | 48577196 | 48577851 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:407, expCount:1, expNums:572, expScores:407, srow:922338 |
| 32089 | chr12 | 48577198 | 48577867 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:173, expCount:1, expNums:8, expScores:173, srow:922339 |
| 32089 | chr12 | 48577853 | 48577867 | phastConsElements100way | lod=33 | score:340, srow:1958137 |
| 32089 | chr12 | 48577877 | 48577884 | phastConsElements100way | lod=21 | score:295, srow:1958138 |
| 32089 | chr12 | 48577706 | 48577895 | wgEncodeRegDnaseClusteredV2 | 5 | score:316, srow:268707 |
| 32089 | chr12 | 48577891 | 48577900 | phastConsElements100way | lod=26 | score:316, srow:1958139 |
| 32089 | chr12 | 48577887 | 48577910 | tfbsConsSites | V$COMP1_01 | score:784, zScore:1.66, srow:1141753 |
| 32089 | chr12 | 48577904 | 48577949 | phastConsElements100way | lod=246 | score:538, srow:1958140 |
| 32089 | chr12 | 48577947 | 48577966 | tfbsConsSites | V$P53_01 | score:680, zScore:1.8, srow:1141755 |
| 32089 | chr12 | 48577940 | 48577967 | tfbsConsSites | V$PAX5_01 | score:765, zScore:1.72, srow:1141754 |
| 32089 | chr12 | 48577967 | 48577967 | cosmic | COSM939800 | srow:277807 |
| 32089 | chr12 | 48577965 | 48577985 | tfbsConsSites | V$NRSF_01 | score:740, zScore:2.21, srow:1141757 |
| 32089 | chr12 | 48577958 | 48577986 | tfbsConsSites | V$MYOGNF1_01 | score:820, zScore:3.1, srow:1141756 |
| 32089 | chr12 | 48577985 | 48577991 | tfbsConsSites | V$AP2REP_01 | score:968, zScore:1.83, srow:1141758 |
| 32089 | chr12 | 48577998 | 48577998 | cosmic | COSM40269 | srow:277808 |
| 32089 | chr12 | 48577991 | 48578001 | tfbsConsSites | V$SREBP1_01 | score:851, zScore:1.7, srow:1141764 |
| 32089 | chr12 | 48577989 | 48578002 | tfbsConsSites | V$MAX_01 | score:835, zScore:1.77, srow:1141762 |
| 32089 | chr12 | 48577989 | 48578002 | tfbsConsSites | V$USF_01 | score:837, zScore:1.75, srow:1141763 |
| 32089 | chr12 | 48577987 | 48578003 | tfbsConsSites | V$XBP1_01 | score:792, zScore:1.86, srow:1141761 |
| 32089 | chr12 | 48577986 | 48578005 | tfbsConsSites | V$MYCMAX_03 | score:797, zScore:1.92, srow:1141759 |
| 32089 | chr12 | 48577986 | 48578005 | tfbsConsSites | V$ARNT_02 | score:842, zScore:2.75, srow:1141760 |
| 32089 | chr12 | 48577994 | 48578015 | tfbsConsSites | V$OLF1_01 | score:821, zScore:2.12, srow:1141765 |
| 32089 | chr12 | 48577995 | 48578015 | tfbsConsSites | V$STAT3_01 | score:755, zScore:1.78, srow:1141766 |
| 32089 | chr12 | 48577952 | 48578030 | phastConsElements100way | lod=364 | score:577, srow:1958141 |
| 32089 | chr12 | 48578050 | 48578061 | tfbsConsSites | V$LMO2COM_01 | score:929, zScore:1.85, srow:1141767 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32089 | cellmeth_recounts | PrEC: 5, LNCaP: 67, DU145: 41 |  |
| 32089 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=39, Length=380, Event=Up, log2FC=3.29, padj=6.0485972066321e-07 |  |
| 32089 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 32089 | cellexp | id=ENSG00000177875, name=C12orf68, PrEC=9, str=18, LNCaP=4, str=4, DU145=58, str=20 |  |
| 32089 | tcgameth | site:cg07454491, B=0.1, L=0.25, H=0.22 |  |
| 32089 | tcgameth | site:cg10216353, B=0.08, L=0.24, H=0.17 |  |
| 32089 | tcgameth | site:cg14793287, B=0.4, L=0.6, H=0.59 |  |
| 32089 | tcgameth | site:cg15959252, B=0.57, L=0.82, H=0.78 |  |
| 32089 | tcgameth | site:cg20954987, B=0.22, L=0.44, H=0.43 |  |
| 32089 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32089 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 32089 | tcgaexp | gene=C12orf68, entrez=387856, pos=chr12:48577366-48579709(+), B=83, L=63, M=80, H=68 |  |