DMR 33856 chr17:30001-30150 (150bp)
| DMR Stats | |
|---|---|
| Position | chr17:30001-30150 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | DOC2B (0bp away) |
| ANODEV p-value | 0.00280740132663 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33856 | DOC2B | 11876 | uc010vpx.1 | chr17 | 6011 | 31420 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33856 | chr17 | 30150 | 30161 | tfbsConsSites | V$AP2_Q6 | score:877, zScore:1.69, srow:2056359 |
| 33856 | chr17 | 30046 | 31295 | wgEncodeRegDnaseClusteredV2 | 38 | score:1000, srow:470936 |
| 33856 | chr17 | 29619 | 31412 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:904, expCount:5, expNums:21,36,38,40,43, expScores:560,337,199,323,316, srow:1606161 |
| 33856 | chr17 | 29995 | 31868 | cpgIsland | CpG: 212 | length:1874, cpgNum:212, gcNum:1231, perCpg:22.6, perGc:65.7, obsExp:1.05, srow:9871 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33856 | cellmeth_recounts | PrEC: 3, LNCaP: 112, DU145: 0 |  |
| 33856 | cellmeth_diffreps_PrECvsLNCaP | A=9, B=116, Length=660, Event=Up, log2FC=3.69, padj=0 |  |
| 33856 | cellmeth_diffreps_LNCaPvsDU145 | A=116.53, B=1.87, Length=580, Event=Down, log2FC=-5.96, padj=0 |  |
| 33856 | tcgaexp | gene=DOC2B, entrez=8447, pos=chr17:6011-31420(-), B=46, L=31, M=32, H=29 |  |