DMR 34110 chr17:27892901-27893600 (700bp)

DMR Stats
Positionchr17:27892901-27893600 (View on UCSC)
Width700bp
Genomic Contextpromoter
Nearest GenesABHD15 (0bp away)
ANODEV p-value0.000242374832034
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
34110 ABHD15 12501 uc002hed.2 chr17 27887689 27894042 - 700 100.0 0.86 0 8.29 E1 (71), I1 (29), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34110 chr17 27891087 27893086 cpgShore — values(x.gr)[overs$srow, ]:18946
34110 chr17 27893109 27893109 cosmic COSM352646 srow:489240
34110 chr17 27893098 27893111 phastConsElements100way lod=127 score:473, srow:3631853
34110 chr17 27892832 27893121 wgEncodeRegTfbsClusteredV3 HNF4G score:133, expCount:1, expNums:183, expScores:133, srow:1662295
34110 chr17 27893119 27893132 phastConsElements100way lod=108 score:457, srow:3631854
34110 chr17 27893134 27893138 phastConsElements100way lod=14 score:255, srow:3631855
34110 chr17 27893143 27893159 phastConsElements100way lod=76 score:422, srow:3631856
34110 chr17 27893154 27893163 tfbsConsSites V$P53_02 score:957, zScore:1.98, srow:2121634
34110 chr17 27893167 27893174 phastConsElements100way lod=76 score:422, srow:3631857
34110 chr17 27893179 27893186 phastConsElements100way lod=58 score:395, srow:3631858
34110 chr17 27893188 27893192 phastConsElements100way lod=35 score:345, srow:3631859
34110 chr17 27893194 27893195 phastConsElements100way lod=40 score:359, srow:3631860
34110 chr17 27893197 27893207 phastConsElements100way lod=78 score:425, srow:3631861
34110 chr17 27893209 27893210 phastConsElements100way lod=27 score:320, srow:3631862
34110 chr17 27893212 27893213 phastConsElements100way lod=16 score:268, srow:3631863
34110 chr17 27893230 27893244 tfbsConsSites V$TAXCREB_02 score:765, zScore:2.03, srow:2121635
34110 chr17 27893033 27893248 wgEncodeRegTfbsClusteredV3 POU5F1 score:113, expCount:1, expNums:148, expScores:113, srow:1662308
34110 chr17 27893215 27893252 phastConsElements100way lod=287 score:554, srow:3631864
34110 chr17 27893254 27893264 phastConsElements100way lod=72 score:417, srow:3631865
34110 chr17 27893266 27893267 phastConsElements100way lod=31 score:333, srow:3631866
34110 chr17 27893269 27893270 phastConsElements100way lod=21 score:295, srow:3631867
34110 chr17 27893272 27893285 phastConsElements100way lod=91 score:440, srow:3631868
34110 chr17 27893287 27893294 phastConsElements100way lod=42 score:363, srow:3631869
34110 chr17 27892953 27893296 wgEncodeRegTfbsClusteredV3 YY1 score:157, expCount:1, expNums:119, expScores:157, srow:1662302
34110 chr17 27893282 27893296 tfbsConsSites V$E2F_01 score:816, zScore:2.85, srow:2121636
  • Page 1 of 4
  • 25 of 88 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34110 cellmeth_recounts PrEC: 90, LNCaP: 1780, DU145: 0
34110 cellmeth_diffreps_PrECvsLNCaP A=134, B=1782, Length=1400, Event=Up, log2FC=3.73, padj=0
34110 cellmeth_diffreps_PrECvsDU145 A=133, B=0, Length=700, Event=Down, log2FC=-Inf, padj=0
34110 cellmeth_diffreps_LNCaPvsDU145 A=1905.04, B=0.94, Length=1380, Event=Down, log2FC=-10.99, padj=0
34110 cellexp id=ENSG00000167543, name=TP53I13, PrEC=1666, str=1928, LNCaP=2080, str=805, DU145=2005, str=1608
34110 cellexp id=ENSG00000168792, name=ABHD15, PrEC=672, str=1303, LNCaP=442, str=511, DU145=1346, str=1502
34110 cellexp id=ENSG00000264031, name=RP11-68I3.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
34110 tcgameth site:cg04528771, B=0.45, L=0.62, H=0.59
34110 tcgameth site:cg23112192, B=0.39, L=0.61, H=0.56
34110 tcgameth site:cg23473955, B=0.39, L=0.7, H=0.64
34110 tcgaexp gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18
34110 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
34110 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
34110 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
34110 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
34110 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
34110 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
34110 tcgaexp gene=ABHD15, entrez=116236, pos=chr17:27887689-27894042(-), B=696, L=582, M=589, H=604
34110 tcgaexp gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223
34110 tcgaexp gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0
34110 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
34110 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
34110 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
34110 tcgaexp gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598
34110 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377
34110 tcgaexp gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90
34110 tcgaexp gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2
34110 tcgaexp gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4