DMR 36516 chr1:2165851-2166050 (200bp)

DMR Stats
Positionchr1:2165851-2166050 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesSKI (0bp away)
ANODEV p-value0.000505516091291
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36516 SKI 98 uc001aja.4 chr1 2160134 2241652 + 200 100.0 0.15 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36516 chr1 2165858 2165869 phastConsElements100way lod=19 score:285, srow:9848
36516 chr1 2165599 2165875 wgEncodeRegTfbsClusteredV3 CTCF score:166, expCount:2, expNums:604,667, expScores:166,149, srow:6840
36516 chr1 2165876 2165878 phastConsElements100way lod=13 score:247, srow:9849
36516 chr1 2165881 2165904 phastConsElements100way lod=94 score:443, srow:9850
36516 chr1 2165909 2165928 phastConsElements100way lod=127 score:473, srow:9851
36516 chr1 2165938 2165950 phastConsElements100way lod=89 score:438, srow:9852
36516 chr1 2165954 2165960 phastConsElements100way lod=19 score:285, srow:9853
36516 chr1 2165747 2166102 wgEncodeRegTfbsClusteredV3 TAF1 score:160, expCount:1, expNums:169, expScores:160, srow:6845
36516 chr1 2165602 2166131 wgEncodeRegTfbsClusteredV3 TFAP2A score:250, expCount:1, expNums:369, expScores:250, srow:6841
36516 chr1 2165711 2166146 wgEncodeRegTfbsClusteredV3 MAZ score:170, expCount:1, expNums:297, expScores:170, srow:6843
36516 chr1 2165634 2166149 wgEncodeRegTfbsClusteredV3 TFAP2C score:330, expCount:1, expNums:370, expScores:330, srow:6842
36516 chr1 2166032 2166195 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:235, expCount:1, expNums:195, expScores:235, srow:6873
36516 chr1 2165841 2166215 wgEncodeRegDnaseClusteredV2 101 score:1000, srow:1350
36516 chr1 2165941 2166216 wgEncodeRegTfbsClusteredV3 ELF1 score:254, expCount:1, expNums:175, expScores:254, srow:6855
36516 chr1 2165852 2166227 wgEncodeRegTfbsClusteredV3 TBP score:283, expCount:1, expNums:412, expScores:283, srow:6849
36516 chr1 2165977 2166266 wgEncodeRegTfbsClusteredV3 HNF4G score:213, expCount:1, expNums:183, expScores:213, srow:6864
36516 chr1 2165992 2166267 wgEncodeRegTfbsClusteredV3 CEBPD score:282, expCount:1, expNums:173, expScores:282, srow:6867
36516 chr1 2165974 2166273 wgEncodeRegTfbsClusteredV3 RXRA score:206, expCount:1, expNums:194, expScores:206, srow:6863
36516 chr1 2165984 2166275 wgEncodeRegTfbsClusteredV3 FOXA1 score:211, expCount:2, expNums:177,178, expScores:156,211, srow:6866
36516 chr1 2166000 2166285 wgEncodeRegTfbsClusteredV3 FOS score:293, expCount:2, expNums:557,559, expScores:293,195, srow:6868
36516 chr1 2165857 2166287 wgEncodeRegTfbsClusteredV3 SMC3 score:203, expCount:2, expNums:408,450, expScores:203,192, srow:6850
36516 chr1 2165950 2166289 wgEncodeRegTfbsClusteredV3 HDAC2 score:227, expCount:1, expNums:181, expScores:227, srow:6859
36516 chr1 2165919 2166295 wgEncodeRegTfbsClusteredV3 MYC score:527, expCount:3, expNums:560,561,575, expScores:527,279,370, srow:6854
36516 chr1 2165969 2166295 wgEncodeRegTfbsClusteredV3 STAT3 score:209, expCount:3, expNums:566,567,568, expScores:186,209,205, srow:6861
36516 chr1 2166005 2166307 wgEncodeRegTfbsClusteredV3 CEBPB score:1000, expCount:8, expNums:172,212,277,378,425,426,462,477, expScores:1000,1000,1000,1000,1000,1000,1000,1000, srow:6869
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  • 25 of 41 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36516 cellmeth_recounts PrEC: 0, LNCaP: 21, DU145: 0
36516 cellmeth_diffreps_PrECvsLNCaP A=0, B=16, Length=360, Event=Up, log2FC=Inf, padj=0.00011637956137607
36516 cellmeth_diffreps_LNCaPvsDU145 A=17.1, B=0, Length=360, Event=Down, log2FC=-Inf, padj=0.000215618666668937
36516 cellexp id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843
36516 tcgaexp gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668
36516 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36516 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305
36516 pubmed gene=SKI, G=2853, GP=19, GC=613, GM=9, GPM=0, GCM=3