DMR 36872 chr1:155931701-155931850 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:155931701-155931850 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | ARHGEF2 (0bp away) |
| ANODEV p-value | 0.000944776208772 |
| Frequencies | Benign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36872 | ARHGEF2 | 1846 | uc001fmr.2 | chr1 | 155916630 | 155947966 | - | 150 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 36872 | ARHGEF2 | 1846 | uc001fms.2 | chr1 | 155916630 | 155948336 | - | 150 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 36872 | ARHGEF2 | 1846 | uc001fmt.2 | chr1 | 155916630 | 155948336 | - | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 36872 | ARHGEF2 | 1846 | uc001fmu.2 | chr1 | 155916630 | 155959864 | - | 150 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (100), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0) | 0.0 |
| 36872 | ARHGEF2 | 1846 | uc010pgt.1 | chr1 | 155931452 | 155949081 | - | 150 | 100.0 | 0.36 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0) | 100.0 |
| 36872 | ARHGEF2 | 1846 | uc010pgu.1 | chr1 | 155931452 | 155959290 | - | 150 | 100.0 | 0.13 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (100), E14 (0) | 100.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36872 | chr1 | 155931700 | 155931704 | phastConsElements100way | lod=45 | score:370, srow:555423 |
| 36872 | chr1 | 155931668 | 155931971 | wgEncodeRegTfbsClusteredV3 | ESR1 | score:153, expCount:1, expNums:74, expScores:153, srow:265199 |
| 36872 | chr1 | 155931714 | 155931977 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:222, expCount:1, expNums:378, expScores:222, srow:265200 |
| 36872 | chr1 | 155931760 | 155932029 | wgEncodeRegTfbsClusteredV3 | YY1 | score:142, expCount:1, expNums:164, expScores:142, srow:265211 |
| 36872 | chr1 | 155931821 | 155932037 | wgEncodeRegTfbsClusteredV3 | FOSL2 | score:1000, expCount:1, expNums:52, expScores:1000, srow:265224 |
| 36872 | chr1 | 155931789 | 155932052 | wgEncodeRegTfbsClusteredV3 | GABPA | score:151, expCount:1, expNums:166, expScores:151, srow:265218 |
| 36872 | chr1 | 155931805 | 155932074 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:983, expCount:2, expNums:313,408, expScores:161,983, srow:265221 |
| 36872 | chr1 | 155931820 | 155932083 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:191, expCount:1, expNums:276, expScores:191, srow:265223 |
| 36872 | chr1 | 155931782 | 155932085 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:240, expCount:1, expNums:251, expScores:240, srow:265216 |
| 36872 | chr1 | 155931788 | 155932087 | wgEncodeRegTfbsClusteredV3 | NR3C1 | score:164, expCount:2, expNums:56,77, expScores:164,162, srow:265217 |
| 36872 | chr1 | 155931829 | 155932088 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:110, expCount:1, expNums:565, expScores:110, srow:265226 |
| 36872 | chr1 | 155931840 | 155932091 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:8, expNums:108,149,193,264,280,355,405,466, expScores:223,354,172,1000,226,130,719,873, srow:265227 |
| 36872 | chr1 | 155931774 | 155932093 | wgEncodeRegTfbsClusteredV3 | JUND | score:452, expCount:1, expNums:393, expScores:452, srow:265214 |
| 36872 | chr1 | 155931763 | 155932094 | wgEncodeRegTfbsClusteredV3 | MYC | score:257, expCount:3, expNums:560,561,624, expScores:257,257,230, srow:265213 |
| 36872 | chr1 | 155931786 | 155932095 | wgEncodeRegDnaseClusteredV2 | 109 | score:1000, srow:73325 |
| 36872 | chr1 | 155931799 | 155932102 | wgEncodeRegTfbsClusteredV3 | FOS | score:1000, expCount:6, expNums:457,556,557,558,559,590, expScores:907,739,850,677,1000,143, srow:265219 |
| 36872 | chr1 | 155931748 | 155932103 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:197, expCount:1, expNums:260, expScores:197, srow:265206 |
| 36872 | chr1 | 155931761 | 155932110 | wgEncodeRegTfbsClusteredV3 | ELK1 | score:146, expCount:1, expNums:387, expScores:146, srow:265212 |
| 36872 | chr1 | 155931738 | 155932113 | wgEncodeRegTfbsClusteredV3 | ZKSCAN1 | score:224, expCount:1, expNums:418, expScores:224, srow:265204 |
| 36872 | chr1 | 155931778 | 155932117 | wgEncodeRegTfbsClusteredV3 | JUN | score:436, expCount:2, expNums:381,458, expScores:237,436, srow:265215 |
| 36872 | chr1 | 155931753 | 155932122 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:271, expCount:1, expNums:380, expScores:271, srow:265209 |
| 36872 | chr1 | 155931747 | 155932130 | wgEncodeRegTfbsClusteredV3 | RCOR1 | score:323, expCount:1, expNums:383, expScores:323, srow:265205 |
| 36872 | chr1 | 155931843 | 155932132 | wgEncodeRegTfbsClusteredV3 | USF2 | score:170, expCount:1, expNums:417, expScores:170, srow:265228 |
| 36872 | chr1 | 155931827 | 155932136 | wgEncodeRegTfbsClusteredV3 | E2F4 | score:160, expCount:1, expNums:562, expScores:160, srow:265225 |
| 36872 | chr1 | 155931730 | 155932137 | wgEncodeRegTfbsClusteredV3 | MAX | score:274, expCount:3, expNums:278,395,460, expScores:239,274,160, srow:265203 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36872 | cellmeth_recounts | PrEC: 0, LNCaP: 3, DU145: 0 |  |
| 36872 | cellexp | id=ENSG00000116584, name=ARHGEF2, PrEC=4903, str=4662, LNCaP=3135, str=610, DU145=8638, str=7522 |  |
| 36872 | tcgameth | site:cg13921921, B=0.47, L=0.64, H=0.56 |  |
| 36872 | tcgaexp | gene=ARHGEF2, entrez=9181, pos=chr1:155916630-155959864(-), B=1901, L=1256, M=1196, H=1373 |  |
| 36872 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36872 | pubmed | gene=ARHGEF2, G=78, GP=2, GC=23, GM=0, GPM=0, GCM=0 |  |