DMR 40936 chr16:2391101-2391850 (750bp)

DMR Stats
Positionchr16:2391101-2391850 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest GenesABCA17P (0bp away)
ANODEV p-value0.000180197983858
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40936 ABCA17P 10788 uc002cqa.1 chr16 2389291 2417125 + 750 100.0 0.16 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
40936 ABCA17P 10788 uc002cqb.1 chr16 2390923 2412667 + 750 100.0 0.09 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0) 0.0
40936 ABCA17P 10788 uc002cqc.1 chr16 2390923 2476700 + 750 100.0 0.12 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40936 chr16 2390943 2391102 wgEncodeRegTfbsClusteredV3 ETS1 score:269, expCount:1, expNums:218, expScores:269, srow:1450933
40936 chr16 2390946 2391110 wgEncodeRegTfbsClusteredV3 RUNX3 score:633, expCount:1, expNums:109, expScores:633, srow:1450934
40936 chr16 2390641 2391116 wgEncodeRegTfbsClusteredV3 STAT1 score:321, expCount:1, expNums:410, expScores:321, srow:1450873
40936 chr16 2390700 2391119 wgEncodeRegTfbsClusteredV3 TAF1 score:356, expCount:1, expNums:199, expScores:356, srow:1450880
40936 chr16 2390974 2391130 wgEncodeRegTfbsClusteredV3 BATF score:794, expCount:1, expNums:81, expScores:794, srow:1450940
40936 chr16 2390525 2391134 wgEncodeRegTfbsClusteredV3 RELA score:243, expCount:2, expNums:327,329, expScores:130,243, srow:1450866
40936 chr16 2390765 2391136 wgEncodeRegTfbsClusteredV3 JUN score:272, expCount:2, expNums:480,484, expScores:104,272, srow:1450905
40936 chr16 2390657 2391140 wgEncodeRegTfbsClusteredV3 ATF3 score:546, expCount:5, expNums:45,80,135,170,208, expScores:546,137,461,454,536, srow:1450875
40936 chr16 2390877 2391144 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:12, expNums:108,149,193,231,264,280,310,355,405,448,466,529, expScores:507,1000,784,567,1000,375,391,744,360,471,1000,114, srow:1450923
40936 chr16 2390579 2391150 wgEncodeRegTfbsClusteredV3 MAZ score:455, expCount:3, expNums:396,440,512, expScores:253,282,322, srow:1450869
40936 chr16 2390951 2391150 wgEncodeRegTfbsClusteredV3 SRF score:124, expCount:1, expNums:236, expScores:124, srow:1450936
40936 chr16 2390705 2391154 wgEncodeRegTfbsClusteredV3 CHD2 score:243, expCount:2, expNums:380,479, expScores:243,204, srow:1450881
40936 chr16 2390878 2391157 wgEncodeRegTfbsClusteredV3 MAFK score:207, expCount:1, expNums:510, expScores:207, srow:1450925
40936 chr16 2390834 2391162 wgEncodeRegTfbsClusteredV3 FOXP2 score:347, expCount:2, expNums:251,255, expScores:347,133, srow:1450914
40936 chr16 2390843 2391166 wgEncodeRegTfbsClusteredV3 SMC3 score:955, expCount:4, expNums:313,408,450,535, expScores:955,954,271,510, srow:1450917
40936 chr16 2390820 2391169 wgEncodeRegTfbsClusteredV3 STAT5A score:240, expCount:1, expNums:237, expScores:240, srow:1450912
40936 chr16 2390846 2391169 wgEncodeRegTfbsClusteredV3 BACH1 score:252, expCount:1, expNums:341, expScores:252, srow:1450918
40936 chr16 2390745 2391170 wgEncodeRegTfbsClusteredV3 RCOR1 score:391, expCount:2, expNums:383,492, expScores:240,391, srow:1450895
40936 chr16 2390810 2391176 wgEncodeRegTfbsClusteredV3 E2F4 score:273, expCount:2, expNums:494,562, expScores:273,262, srow:1450911
40936 chr16 2390858 2391177 wgEncodeRegTfbsClusteredV3 POU2F2 score:221, expCount:1, expNums:106, expScores:221, srow:1450921
40936 chr16 2390883 2391178 wgEncodeRegTfbsClusteredV3 HNF4A score:143, expCount:1, expNums:432, expScores:143, srow:1450927
40936 chr16 2390958 2391181 wgEncodeRegTfbsClusteredV3 NFE2 score:115, expCount:1, expNums:515, expScores:115, srow:1450938
40936 chr16 2390908 2391184 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:4, expNums:276,284,423,472, expScores:569,1000,1000,1000, srow:1450930
40936 chr16 2390614 2391189 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:99, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:1000,1000,1000,1000,730,806,1000,1000,1000,1000,868,1000,1000,1000,1000,1000,1000,1000,1000,982,1000,990,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,768,1000,414,634,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,858,1000,1000,780,1000,1000,765,1000,144,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,492,1000,1000,1000,639,1000,1000,741,622,1000,260,1000,750,1000,1000,640,1000,1000,1000,1000,973,374,1000,1000,729,1000,1000,1000,1000,610, srow:1450870
40936 chr16 2390541 2391195 wgEncodeRegTfbsClusteredV3 CCNT2 score:403, expCount:1, expNums:476, expScores:370, srow:1450867
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  • 25 of 66 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40936 cellmeth_recounts PrEC: 27, LNCaP: 2020, DU145: 27
40936 cellmeth_diffreps_PrECvsLNCaP A=71, B=2529, Length=1560, Event=Up, log2FC=5.15, padj=0
40936 cellmeth_diffreps_LNCaPvsDU145 A=2699.34, B=26.19, Length=1480, Event=Down, log2FC=-6.69, padj=0
40936 cellexp id=ENSG00000238098, name=ABCA17P, PrEC=1, str=0, LNCaP=162, str=123, DU145=30, str=16
40936 tcgaexp gene=ABCA17P, entrez=650655, pos=chr16:2389291-2476700(+), B=11, L=8, M=9, H=9
40936 pubmed gene=ABCA3, G=200, GP=0, GC=36, GM=0, GPM=0, GCM=0
40936 pubmed gene=ABCA17P, G=2, GP=0, GC=0, GM=0, GPM=0, GCM=0