DMR Stats | |
---|---|
Position | chr1:1158251-1158450 (View on UCSC) |
Width | 200bp |
Genomic Context | 3' end |
Nearest Genes | SDF4 (0bp away) |
ANODEV p-value | 0.00794969466675 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5 | SDF4 | 51 | uc001adh.4 | chr1 | 1152288 | 1167447 | - | 200 | 100.0 | 1.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
5 | SDF4 | 51 | uc001adi.4 | chr1 | 1152288 | 1167447 | - | 200 | 100.0 | 1.86 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
5 | SDF4 | 51 | uc001adj.1 | chr1 | 1158104 | 1159348 | - | 200 | 100.0 | 0.8 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
5 | SDF4 | 51 | uc009vjw.3 | chr1 | 1152288 | 1167447 | - | 200 | 100.0 | 1.07 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
5 | chr1 | 1158156 | 1158465 | wgEncodeRegTfbsClusteredV3 | GATA1 | score:104, expCount:1, expNums:497, expScores:104, srow:2323 |
5 | chr1 | 1158124 | 1158473 | wgEncodeRegTfbsClusteredV3 | STAT5A | score:393, expCount:1, expNums:237, expScores:393, srow:2322 |
5 | chr1 | 1158407 | 1158540 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:444, expCount:1, expNums:117, expScores:444, srow:2328 |
5 | chr1 | 1158238 | 1158547 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:184, expCount:1, expNums:358, expScores:184, srow:2325 |
5 | chr1 | 1158181 | 1158550 | wgEncodeRegDnaseClusteredV2 | 4 | score:203, srow:445 |
5 | chr1 | 1158403 | 1158622 | wgEncodeRegTfbsClusteredV3 | PBX3 | score:253, expCount:1, expNums:102, expScores:253, srow:2327 |
5 | chr1 | 1158339 | 1158638 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:488, expCount:1, expNums:83, expScores:488, srow:2326 |
5 | chr1 | 1158110 | 1158755 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:626, expCount:5, expNums:61,104,105,130,616, expScores:363,378,626,268,251, srow:2321 |
5 | chr1 | 1158188 | 1158783 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:538, expCount:1, expNums:96, expScores:538, srow:2324 |
5 | chr1 | 1157169 | 1159168 | cpgShore | — | values(x.gr)[overs$srow, ]:98 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
5 | cellmeth_recounts | PrEC: 1352, LNCaP: 1246, DU145: 56 | |
5 | cellmeth_diffreps_PrECvsLNCaP | A=2552, B=1334, Length=720, Event=Down, log2FC=-0.94, padj=0 | |
5 | cellmeth_diffreps_PrECvsDU145 | A=3018, B=105, Length=1800, Event=Down, log2FC=-4.85, padj=0 | |
5 | cellmeth_diffreps_LNCaPvsDU145 | A=1742.54, B=97.28, Length=1780, Event=Down, log2FC=-4.16, padj=0 | |
5 | cellexp | id=ENSG00000078808, name=SDF4, PrEC=8539, str=17158, LNCaP=12900, str=10663, DU145=8047, str=7983 | |
5 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
5 | tcgaexp | gene=SDF4, entrez=51150, pos=chr1:1152288-1167447(-), B=9386, L=11625, M=11248, H=9757 | |
5 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |