DMR 65 chr1:5945801-5946000 (200bp)

DMR Stats
Positionchr1:5945801-5946000 (View on UCSC)
Width200bp
Genomic Context3' end
Nearest GenesNPHP4 (0bp away)
ANODEV p-value0.0321455128732
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
65 NPHP4 140 uc001alq.2 chr1 5922870 6052533 - 200 100.0 0.2 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (100), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0) 0.0
65 NPHP4 140 uc001als.2 chr1 5936014 6052533 - 200 100.0 0.2 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (100), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) 0.0
65 NPHP4 140 uc001alt.3 chr1 5937153 6052533 - 200 100.0 0.26 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (100), E15 (0), I15 (0), E16 (0) 0.0
65 NPHP4 140 uc009vlt.2 chr1 5937153 6052533 - 200 100.0 0.2 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (100), E16 (0), I16 (0), E17 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
65 chr1 5945872 5945885 tfbsConsSites V$FOXJ2_02 score:881, zScore:2.42, srow:8822
65 chr1 5945760 5946127 wgEncodeRegTfbsClusteredV3 HDAC2 score:294, expCount:2, expNums:27,222, expScores:151,294, srow:12136
65 chr1 5945952 5946128 wgEncodeRegTfbsClusteredV3 GABPA score:525, expCount:1, expNums:220, expScores:525, srow:12162
65 chr1 5945929 5946144 wgEncodeRegTfbsClusteredV3 MEF2A score:147, expCount:1, expNums:224, expScores:147, srow:12158
65 chr1 5945986 5946149 wgEncodeRegTfbsClusteredV3 STAT5A score:1000, expCount:1, expNums:237, expScores:1000, srow:12163
65 chr1 5945847 5946156 wgEncodeRegTfbsClusteredV3 BHLHE40 score:296, expCount:1, expNums:472, expScores:296, srow:12141
65 chr1 5945991 5946156 wgEncodeRegTfbsClusteredV3 HMGN3 score:473, expCount:1, expNums:501, expScores:473, srow:12164
65 chr1 5945900 5946165 wgEncodeRegTfbsClusteredV3 NR2F2 score:1000, expCount:1, expNums:225, expScores:1000, srow:12151
65 chr1 5945941 5946170 wgEncodeRegDnaseClusteredV2 4 score:986, srow:4422
65 chr1 5945867 5946170 wgEncodeRegTfbsClusteredV3 JUN score:117, expCount:1, expNums:481, expScores:117, srow:12144
65 chr1 5945941 5946170 wgEncodeRegTfbsClusteredV3 REST score:480, expCount:1, expNums:226, expScores:480, srow:12160
65 chr1 5945950 5946185 wgEncodeRegTfbsClusteredV3 TRIM28 score:1000, expCount:1, expNums:242, expScores:1000, srow:12161
65 chr1 5945940 5946195 wgEncodeRegTfbsClusteredV3 CCNT2 score:723, expCount:1, expNums:476, expScores:723, srow:12159
65 chr1 5945684 5946207 wgEncodeRegTfbsClusteredV3 HDAC1 score:201, expCount:1, expNums:26, expScores:201, srow:12133
65 chr1 5945913 5946212 wgEncodeRegTfbsClusteredV3 SP1 score:164, expCount:1, expNums:234, expScores:164, srow:12157
65 chr1 5945908 5946216 wgEncodeRegTfbsClusteredV3 GATA2 score:1000, expCount:4, expNums:221,498,586,591, expScores:1000,598,1000,1000, srow:12155
65 chr1 5945851 5946220 wgEncodeRegTfbsClusteredV3 MAZ score:282, expCount:1, expNums:512, expScores:282, srow:12142
65 chr1 5945766 5946221 wgEncodeRegTfbsClusteredV3 JUND score:392, expCount:2, expNums:507,594, expScores:392,275, srow:12137
65 chr1 5945902 5946222 wgEncodeRegTfbsClusteredV3 TAL1 score:1000, expCount:1, expNums:542, expScores:1000, srow:12152
65 chr1 5945839 5946228 wgEncodeRegTfbsClusteredV3 ETS1 score:213, expCount:1, expNums:218, expScores:213, srow:12140
65 chr1 5945868 5946229 wgEncodeRegTfbsClusteredV3 IRF1 score:189, expCount:2, expNums:504,505, expScores:189,181, srow:12145
65 chr1 5945906 5946229 wgEncodeRegTfbsClusteredV3 CEBPB score:408, expCount:1, expNums:212, expScores:408, srow:12153
65 chr1 5945897 5946232 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:833, expCount:1, expNums:544, expScores:833, srow:12150
65 chr1 5945625 5946237 wgEncodeRegTfbsClusteredV3 EP300 score:1000, expCount:3, expNums:29,263,519, expScores:237,329,1000, srow:12132
65 chr1 5945885 5946240 wgEncodeRegTfbsClusteredV3 RCOR1 score:1000, expCount:2, expNums:491,492, expScores:248,1000, srow:12147
  • Page 1 of 2
  • 25 of 36 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
65 cellmeth_recounts PrEC: 53, LNCaP: 6, DU145: 3
65 cellmeth_diffreps_PrECvsLNCaP A=80, B=5, Length=440, Event=Down, log2FC=-4, padj=0
65 cellmeth_diffreps_PrECvsDU145 A=80, B=3, Length=480, Event=Down, log2FC=-4.74, padj=0
65 cellexp id=ENSG00000131697, name=NPHP4, PrEC=1480, str=1194, LNCaP=1452, str=836, DU145=1085, str=983
65 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
65 tcgaexp gene=NPHP4, entrez=261734, pos=chr1:5922870-6052533(-), B=469, L=561, M=543, H=654
65 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305