DMR 9264 chr20:44803151-44803750 (600bp)
| DMR Stats | |
|---|---|
| Position | chr20:44803151-44803750 (View on UCSC) |
| Width | 600bp |
| Genomic Context | 3' end |
| Nearest Genes | CDH22 (0bp away) |
| ANODEV p-value | 2.06868578724e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9264 | CDH22 | 18404 | uc010ghk.2 | chr20 | 44802372 | 44937137 | - | 600 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (5.83), E12 (94.33) | 36.83 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 9264 | chr20 | 44803142 | 44803153 | phastConsElements100way | lod=79 | score:426, srow:5381694 |
| 9264 | chr20 | 44803161 | 44803168 | phastConsElements100way | lod=43 | score:366, srow:5381695 |
| 9264 | chr20 | 44803165 | 44803182 | tfbsConsSites | V$AP4_01 | score:811, zScore:1.66, srow:3127878 |
| 9264 | chr20 | 44803168 | 44803185 | tfbsConsSites | V$AHR_01 | score:777, zScore:1.88, srow:3127879 |
| 9264 | chr20 | 44803041 | 44803190 | wgEncodeRegDnaseClusteredV2 | 3 | score:195, srow:722830 |
| 9264 | chr20 | 44803173 | 44803192 | phastConsElements100way | lod=114 | score:462, srow:5381696 |
| 9264 | chr20 | 44803203 | 44803210 | tfbsConsSites | V$STAT3_02 | score:985, zScore:1.64, srow:3127881 |
| 9264 | chr20 | 44803194 | 44803210 | phastConsElements100way | lod=182 | score:509, srow:5381697 |
| 9264 | chr20 | 44803198 | 44803211 | tfbsConsSites | V$ELK1_02 | score:888, zScore:2.08, srow:3127880 |
| 9264 | chr20 | 44803212 | 44803246 | phastConsElements100way | lod=339 | score:570, srow:5381698 |
| 9264 | chr20 | 44803248 | 44803250 | phastConsElements100way | lod=45 | score:370, srow:5381699 |
| 9264 | chr20 | 44803271 | 44803271 | cosmic | COSM1247834 | srow:756575 |
| 9264 | chr20 | 44803259 | 44803279 | tfbsConsSites | V$NRSF_01 | score:758, zScore:2.5, srow:3127882 |
| 9264 | chr20 | 44803254 | 44803283 | phastConsElements100way | lod=213 | score:524, srow:5381700 |
| 9264 | chr20 | 44803287 | 44803288 | phastConsElements100way | lod=26 | score:316, srow:5381701 |
| 9264 | chr20 | 44803290 | 44803291 | phastConsElements100way | lod=21 | score:295, srow:5381702 |
| 9264 | chr20 | 44803293 | 44803313 | tfbsConsSites | V$PAX4_01 | score:851, zScore:2.63, srow:3127883 |
| 9264 | chr20 | 44803293 | 44803315 | phastConsElements100way | lod=224 | score:529, srow:5381703 |
| 9264 | chr20 | 44803303 | 44803319 | tfbsConsSites | V$PPARG_03 | score:815, zScore:2.46, srow:3127884 |
| 9264 | chr20 | 44803303 | 44803326 | tfbsConsSites | V$BRACH_01 | score:696, zScore:2.02, srow:3127885 |
| 9264 | chr20 | 44803317 | 44803336 | phastConsElements100way | lod=255 | score:542, srow:5381704 |
| 9264 | chr20 | 44803338 | 44803342 | phastConsElements100way | lod=67 | score:410, srow:5381705 |
| 9264 | chr20 | 44803333 | 44803352 | tfbsConsSites | V$P53_01 | score:684, zScore:1.87, srow:3127886 |
| 9264 | chr20 | 44803339 | 44803352 | tfbsConsSites | V$ROAZ_01 | score:764, zScore:2.04, srow:3127887 |
| 9264 | chr20 | 44803346 | 44803362 | tfbsConsSites | V$XBP1_01 | score:790, zScore:1.82, srow:3127889 |
- Page 1 of 4
- Next
- 25 of 85 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 9264 | cellmeth_recounts | PrEC: 88, LNCaP: 321, DU145: 10 |  |
| 9264 | cellmeth_diffreps_PrECvsLNCaP | A=110, B=232, Length=580, Event=Up, log2FC=1.08, padj=2.14396607284609e-09 |  |
| 9264 | cellmeth_diffreps_PrECvsDU145 | A=137, B=9, Length=820, Event=Down, log2FC=-3.93, padj=0 |  |
| 9264 | cellmeth_diffreps_LNCaPvsDU145 | A=274.74, B=9.35, Length=860, Event=Down, log2FC=-4.88, padj=0 |  |
| 9264 | cellexp | id=ENSG00000149654, name=CDH22, PrEC=0, str=0, LNCaP=1, str=1, DU145=4, str=2 |  |
| 9264 | tcgameth | site:cg12347346, B=0.33, L=0.41, H=0.35 |  |
| 9264 | tcgameth | site:cg13390630, B=0.3, L=0.41, H=0.26 |  |
| 9264 | tcgameth | site:cg17412248, B=0.23, L=0.26, H=0.21 |  |
| 9264 | tcgameth | site:cg17964981, B=0.33, L=0.39, H=0.3 |  |
| 9264 | tcgaexp | gene=CDH22, entrez=64405, pos=chr20:44802372-44937137(-), B=213, L=132, M=107, H=98 |  |