DMR Stats | |
---|---|
Position | chr8:49468251-49469100 (View on UCSC) |
Width | 850bp |
Genomic Context | intergenic |
Nearest Genes | EFCAB1 (154250bp away) |
ANODEV p-value | 4.33801143155e-12 |
Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
29893 | chr8 | 49468575 | 49468596 | tfbsConsSites | V$MEF2_03 | score:800, zScore:2.1, srow:5105213 |
29893 | chr8 | 49468588 | 49468602 | tfbsConsSites | V$HNF3B_01 | score:867, zScore:1.84, srow:5105214 |
29893 | chr8 | 49468636 | 49468650 | tfbsConsSites | V$HNF1_01 | score:816, zScore:1.98, srow:5105215 |
29893 | chr8 | 49467706 | 49468655 | wgEncodeRegDnaseClusteredV2 | 63 | score:1000, srow:1158857 |
29893 | chr8 | 49468521 | 49468664 | phastConsElements100way | lod=733 | score:647, srow:8825229 |
29893 | chr8 | 49468656 | 49468669 | tfbsConsSites | V$POU3F2_01 | score:791, zScore:1.74, srow:5105216 |
29893 | chr8 | 49468676 | 49468683 | tfbsConsSites | V$STAT1_03 | score:997, zScore:1.94, srow:5105217 |
29893 | chr8 | 49466684 | 49468683 | cpgShore | — | values(x.gr)[overs$srow, ]:46455 |
29893 | chr8 | 49468671 | 49468686 | phastConsElements100way | lod=70 | score:414, srow:8825230 |
29893 | chr8 | 49468689 | 49468697 | phastConsElements100way | lod=22 | score:300, srow:8825231 |
29893 | chr8 | 49468792 | 49468798 | tfbsConsSites | V$AP2REP_01 | score:957, zScore:1.65, srow:5105218 |
29893 | chr8 | 49468796 | 49468805 | tfbsConsSites | V$NFKAPPAB50_01 | score:861, zScore:1.73, srow:5105219 |
29893 | chr8 | 49468811 | 49468819 | tfbsConsSites | V$MSX1_01 | score:898, zScore:1.75, srow:5105220 |
29893 | chr8 | 49468851 | 49468859 | tfbsConsSites | V$MSX1_01 | score:942, zScore:2.59, srow:5105224 |
29893 | chr8 | 49468845 | 49468861 | tfbsConsSites | V$YY1_01 | score:867, zScore:1.82, srow:5105221 |
29893 | chr8 | 49468847 | 49468862 | tfbsConsSites | V$FREAC3_01 | score:809, zScore:1.85, srow:5105223 |
29893 | chr8 | 49468846 | 49468863 | tfbsConsSites | V$SRF_01 | score:771, zScore:2.53, srow:5105222 |
29893 | chr8 | 49468873 | 49468894 | tfbsConsSites | V$TCF11MAFG_01 | score:747, zScore:1.76, srow:5105225 |
29893 | chr8 | 49468774 | 49468941 | phastConsElements100way | lod=1608 | score:724, srow:8825232 |
29893 | chr8 | 49468943 | 49468958 | phastConsElements100way | lod=68 | score:411, srow:8825233 |
29893 | chr8 | 49468684 | 49468959 | cpgIsland | CpG: 35 | length:276, cpgNum:35, gcNum:205, perCpg:25.4, perGc:74.3, obsExp:0.93, srow:25664 |
29893 | chr8 | 49468952 | 49468970 | tfbsConsSites | V$AHRARNT_02 | score:808, zScore:2.36, srow:5105226 |
29893 | chr8 | 49468963 | 49468990 | phastConsElements100way | lod=139 | score:482, srow:8825234 |
29893 | chr8 | 49469010 | 49469011 | phastConsElements100way | lod=17 | score:274, srow:8825235 |
29893 | chr8 | 49468783 | 49469022 | wgEncodeRegTfbsClusteredV3 | USF1 | score:135, expCount:1, expNums:265, expScores:135, srow:3985961 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
29893 | cellmeth_recounts | PrEC: 3, LNCaP: 396, DU145: 28 | |
29893 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=318, Length=1100, Event=Up, log2FC=6.31, padj=0 | |
29893 | cellmeth_diffreps_LNCaPvsDU145 | A=35.28, B=0.94, Length=400, Event=Down, log2FC=-5.24, padj=4.08953502356965e-08 | |
29893 | cellmeth_diffreps_LNCaPvsDU145 | A=304.68, B=18.71, Length=660, Event=Down, log2FC=-4.03, padj=0 | |
29893 | cellexp | id=ENSG00000253608, name=RP11-770E5.1, PrEC=8, str=27, LNCaP=0, str=0, DU145=0, str=0 | |
29893 | cellexp | id=ENSG00000253688, name=RP11-567J20.2, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=0 | |
29893 | tcgameth | site:cg04920358, B=0.07, L=0.47, H=0.4 | |
29893 | tcgameth | site:cg10826197, B=0.03, L=0.33, H=0.38 | |
29893 | tcgameth | site:cg14095438, B=0.16, L=0.56, H=0.51 | |
29893 | tcgameth | site:cg14907769, B=0.18, L=0.62, H=0.57 | |
29893 | tcgameth | site:cg18991611, B=0.07, L=0.59, H=0.54 | |
29893 | tcgameth | site:cg19414967, B=0.33, L=0.67, H=0.66 | |
29893 | tcgameth | site:cg20527270, B=0.1, L=0.67, H=0.56 | |
29893 | tcgameth | site:cg27038634, B=0.27, L=0.55, H=0.55 |