DMR 30218 chr9:6412301-6412850 (550bp)
| DMR Stats | |
|---|---|
| Position | chr9:6412301-6412850 (View on UCSC) |
| Width | 550bp |
| Genomic Context | promoter |
| Nearest Genes | UHRF2 (300bp away) |
| ANODEV p-value | 7.36160539934e-10 |
| Frequencies | Benign: 3.0 (42.86%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30218 | chr9 | 6412367 | 6413228 | wgEncodeRegTfbsClusteredV3 | MTA3 | score:523, expCount:1, expNums:95, expScores:325, srow:4120159 |
| 30218 | chr9 | 6412421 | 6413270 | wgEncodeRegDnaseClusteredV2 | 125 | score:1000, srow:1200645 |
| 30218 | chr9 | 6412572 | 6413304 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:307, expCount:4, expNums:100,101,122,129, expScores:307,209,123,139, srow:4120170 |
| 30218 | chr9 | 6412715 | 6413342 | wgEncodeRegTfbsClusteredV3 | TBL1XR1 | score:371, expCount:1, expNums:316, expScores:265, srow:4120176 |
| 30218 | chr9 | 6412777 | 6413361 | wgEncodeRegTfbsClusteredV3 | FOXM1 | score:617, expCount:1, expNums:90, expScores:211, srow:4120180 |
| 30218 | chr9 | 6412728 | 6413390 | wgEncodeRegTfbsClusteredV3 | MAZ | score:322, expCount:1, expNums:297, expScores:217, srow:4120179 |
| 30218 | chr9 | 6412498 | 6413447 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:642, expCount:10, expNums:65,115,127,132,157,169,199,238,254,261, expScores:136,617,536,242,160,453,363,339,218,383, srow:4120166 |
| 30218 | chr9 | 6412582 | 6413475 | wgEncodeRegTfbsClusteredV3 | MYC | score:467, expCount:12, expNums:382,486,487,488,489,560,561,575,600,623,624,626, expScores:259,185,399,240,381,467,206,332,126,244,220,335, srow:4120171 |
| 30218 | chr9 | 6412354 | 6414097 | cpgIsland | CpG: 178 | length:1744, cpgNum:178, gcNum:1144, perCpg:20.4, perGc:65.6, obsExp:0.95, srow:26334 |
| 30218 | chr9 | 6412270 | 6414708 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:66, expNums:22,32,61,62,78,104,105,123,124,130,131,146,147,163,168,191,192,206,207,228,229,256,259,275,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,445,446,461,465,520,521,522,523,525,563,564,577,583,585,596,599,602,610,613,616,619,622,632,633,634,637, expScores:176,181,1000,1000,917,1000,1000,728,1000,317,344,628,309,983,1000,741,823,398,262,431,1000,392,511,335,354,1000,784,262,1000,230,1000,267,1000,1000,1000,187,191,221,929,422,441,654,736,941,276,309,463,456,701,1000,1000,704,801,1000,557,212,187,135,490,235,448,484,1000,1000,683,296, srow:4120158 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30218 | cellmeth_recounts | PrEC: 39, LNCaP: 302, DU145: 35 |  |
| 30218 | cellmeth_diffreps_PrECvsLNCaP | A=48, B=233, Length=640, Event=Up, log2FC=2.28, padj=0 |  |
| 30218 | cellmeth_diffreps_PrECvsDU145 | A=58, B=17, Length=380, Event=Down, log2FC=-1.77, padj=7.26627788439946e-05 |  |
| 30218 | cellmeth_diffreps_LNCaPvsDU145 | A=264.05, B=25.26, Length=740, Event=Down, log2FC=-3.39, padj=0 |  |
| 30218 | tcgameth | site:cg24119045, B=0.08, L=0.27, H=0.23 |  |