DMR Stats | |
---|---|
Position | chr1:1397851-1398100 (View on UCSC) |
Width | 250bp |
Genomic Context | exon |
Nearest Genes | ATAD3C (0bp away) |
ANODEV p-value | 0.000190528774031 |
Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 4.0 (44.44 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36507 | ATAD3C | 70 | uc001aft.2 | chr1 | 1385069 | 1405538 | + | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (51.6), E11 (43.6), I11 (5.2), E12 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
36507 | chr1 | 1397877 | 1398152 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:293, expCount:1, expNums:107, expScores:293, srow:3940 |
36507 | chr1 | 1398023 | 1398231 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:643, expCount:1, expNums:117, expScores:643, srow:3944 |
36507 | chr1 | 1397970 | 1398233 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:166, expCount:1, expNums:86, expScores:166, srow:3942 |
36507 | chr1 | 1397963 | 1398272 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:709, expCount:3, expNums:100,101,129, expScores:709,316,328, srow:3941 |
36507 | chr1 | 1398095 | 1398294 | wgEncodeRegTfbsClusteredV3 | USF1 | score:489, expCount:2, expNums:118,202, expScores:489,286, srow:3945 |
36507 | chr1 | 1397982 | 1398317 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:1000, expCount:1, expNums:116, expScores:1000, srow:3943 |
36507 | chr1 | 1397606 | 1398330 | wgEncodeRegDnaseClusteredV2 | 59 | score:1000, srow:683 |
36507 | chr1 | 1396339 | 1398338 | cpgShore | — | values(x.gr)[overs$srow, ]:152 |
36507 | chr1 | 1397675 | 1398364 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:335, expCount:5, expNums:130,192,306,328,445, expScores:282,270,335,319,83, srow:3932 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
36507 | cellmeth_recounts | PrEC: 0, LNCaP: 8, DU145: 5 | |
36507 | cellexp | id=ENSG00000215915, name=ATAD3C, PrEC=99, str=36, LNCaP=39, str=33, DU145=28, str=20 | |
36507 | tcgameth | site:cg24687970, B=0.34, L=0.64, H=0.62 | |
36507 | tcgameth | site:cg25101405, B=0.31, L=0.62, H=0.58 | |
36507 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
36507 | tcgaexp | gene=ATAD3C, entrez=219293, pos=chr1:1385069-1405538(+), B=392, L=189, M=171, H=134 | |
36507 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 | |
36507 | pubmed | gene=ATAD3C, G=3, GP=0, GC=3, GM=0, GPM=0, GCM=0 |