DMR Stats | |
---|---|
Position | chr2:230222551-230223000 (View on UCSC) |
Width | 450bp |
Genomic Context | 3' end |
Nearest Genes | DNER (0bp away) |
ANODEV p-value | 0.00518811474899 |
Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1411 | DNER | 17694 | uc002vpv.3 | chr2 | 230222345 | 230579286 | - | 450 | 100.0 | 3.65 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (100) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
1411 | chr2 | 230222535 | 230222555 | phastConsElements100way | lod=67 | score:410, srow:5191899 |
1411 | chr2 | 230222557 | 230222567 | phastConsElements100way | lod=19 | score:285, srow:5191900 |
1411 | chr2 | 230222574 | 230222584 | phastConsElements100way | lod=69 | score:413, srow:5191901 |
1411 | chr2 | 230222586 | 230222587 | phastConsElements100way | lod=18 | score:280, srow:5191902 |
1411 | chr2 | 230222605 | 230222611 | phastConsElements100way | lod=15 | score:262, srow:5191903 |
1411 | chr2 | 230222616 | 230222620 | phastConsElements100way | lod=21 | score:295, srow:5191904 |
1411 | chr2 | 230222642 | 230222654 | phastConsElements100way | lod=42 | score:363, srow:5191905 |
1411 | chr2 | 230222657 | 230222663 | phastConsElements100way | lod=17 | score:274, srow:5191906 |
1411 | chr2 | 230222666 | 230222698 | phastConsElements100way | lod=69 | score:413, srow:5191907 |
1411 | chr2 | 230222676 | 230222682 | tfbsConsSites | V$SRY_01 | score:1000, zScore:1.69, srow:3008039 |
1411 | chr2 | 230222701 | 230222710 | phastConsElements100way | lod=49 | score:379, srow:5191908 |
1411 | chr2 | 230222713 | 230222874 | phastConsElements100way | lod=834 | score:659, srow:5191909 |
1411 | chr2 | 230222775 | 230222789 | tfbsConsSites | V$EVI1_04 | score:816, zScore:1.83, srow:3008040 |
1411 | chr2 | 230222792 | 230222801 | tfbsConsSites | V$NKX22_01 | score:873, zScore:1.66, srow:3008041 |
1411 | chr2 | 230222808 | 230222821 | tfbsConsSites | V$FAC1_01 | score:833, zScore:1.64, srow:3008042 |
1411 | chr2 | 230222809 | 230222826 | tfbsConsSites | V$FOXJ2_01 | score:935, zScore:2.59, srow:3008043 |
1411 | chr2 | 230222812 | 230222826 | tfbsConsSites | V$HNF3B_01 | score:918, zScore:2.78, srow:3008044 |
1411 | chr2 | 230222813 | 230222824 | tfbsConsSites | V$FOXD3_01 | score:888, zScore:1.73, srow:3008045 |
1411 | chr2 | 230222834 | 230222845 | tfbsConsSites | V$E4BP4_01 | score:847, zScore:2.14, srow:3008046 |
1411 | chr2 | 230222835 | 230222844 | tfbsConsSites | V$HLF_01 | score:869, zScore:1.74, srow:3008047 |
1411 | chr2 | 230222836 | 230222843 | tfbsConsSites | V$CREBP1_01 | score:865, zScore:1.65, srow:3008048 |
1411 | chr2 | 230222885 | 230222914 | phastConsElements100way | lod=206 | score:521, srow:5191910 |
1411 | chr2 | 230222927 | 230222934 | phastConsElements100way | lod=42 | score:363, srow:5191911 |
1411 | chr2 | 230222951 | 230222960 | tfbsConsSites | V$HLF_01 | score:877, zScore:1.89, srow:3008049 |
1411 | chr2 | 230222953 | 230222969 | phastConsElements100way | lod=56 | score:392, srow:5191912 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
1411 | cellmeth_recounts | PrEC: 3, LNCaP: 0, DU145: 6 | |
1411 | cellexp | id=ENSG00000187957, name=DNER, PrEC=176, str=80, LNCaP=2, str=9, DU145=110, str=65 | |
1411 | tcgameth | site:cg17165432, B=0.89, L=0.91, H=0.89 | |
1411 | tcgaexp | gene=DNER, entrez=92737, pos=chr2:230222345-230579286(-), B=461, L=100, M=321, H=351 |