DMR Stats | |
---|---|
Position | chr1:14140251-14140450 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | PRDM2 (0bp away) |
ANODEV p-value | 0.00160792025279 |
Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
25024 | PRDM2 | 265 | uc001avg.3 | chr1 | 14026735 | 14151574 | + | 200 | 100.0 | 0.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0) | 0.0 |
25024 | PRDM2 | 265 | uc001avi.3 | chr1 | 14031350 | 14151574 | + | 200 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0) | 0.0 |
25024 | PRDM2 | 265 | uc009voe.3 | chr1 | 14075856 | 14151574 | + | 200 | 100.0 | 0.13 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
25024 | PRDM2 | 265 | uc009vof.3 | chr1 | 14075856 | 14151574 | + | 200 | 100.0 | 0.13 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
25024 | chr1 | 14139796 | 14140797 | oreganno | OREG0013113 | id:OREG0013113, srow:203 |
25024 | chr1 | 14139848 | 14140287 | wgEncodeRegTfbsClusteredV3 | CBX3 | score:368, expCount:1, expNums:211, expScores:368, srow:35806 |
25024 | chr1 | 14139985 | 14140280 | wgEncodeRegTfbsClusteredV3 | RCOR1 | score:342, expCount:1, expNums:492, expScores:342, srow:35807 |
25024 | chr1 | 14140097 | 14140432 | wgEncodeRegTfbsClusteredV3 | YY1 | score:256, expCount:1, expNums:162, expScores:256, srow:35808 |
25024 | chr1 | 14140110 | 14140508 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:93, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,137,174,213,262,290,463,493,595,597,598,601,603,604,605,606,607,609,612,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:410,1000,983,577,341,194,660,334,550,1000,202,797,328,464,999,94,91,1000,330,1000,160,933,690,1000,820,1000,455,1000,887,1000,1000,572,1000,780,737,253,1000,553,510,306,837,731,566,747,380,1000,776,458,1000,804,719,124,1000,863,1000,1000,1000,1000,758,759,601,755,803,1000,570,1000,1000,1000,496,665,694,649,475,1000,536,919,1000,1000,509,1000,638,1000,1000,200,183,753,389,340,524,482,174,496,555, srow:35809 |
25024 | chr1 | 14140114 | 14140483 | wgEncodeRegTfbsClusteredV3 | MAZ | score:256, expCount:1, expNums:512, expScores:256, srow:35810 |
25024 | chr1 | 14140130 | 14140440 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:376, expCount:2, expNums:361,552, expScores:376,338, srow:35811 |
25024 | chr1 | 14140139 | 14140474 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:151, expCount:1, expNums:256, expScores:151, srow:35812 |
25024 | chr1 | 14140151 | 14140460 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:393, expCount:3, expNums:100,101,129, expScores:393,185,178, srow:35813 |
25024 | chr1 | 14140160 | 14140443 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:391, expCount:3, expNums:313,408,535, expScores:342,209,391, srow:35814 |
25024 | chr1 | 14140181 | 14140430 | wgEncodeRegDnaseClusteredV2 | 68 | score:777, srow:10893 |
25024 | chr1 | 14140183 | 14140426 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:6, expNums:108,149,231,355,466,529, expScores:520,1000,564,612,486,97, srow:35815 |
25024 | chr1 | 14140216 | 14140385 | wgEncodeRegTfbsClusteredV3 | CTCFL | score:229, expCount:1, expNums:214, expScores:229, srow:35816 |
25024 | chr1 | 14140248 | 14140389 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:479, expCount:2, expNums:88,217, expScores:294,479, srow:35817 |
25024 | chr1 | 14140293 | 14140313 | oreganno | OREG0007951 | id:OREG0007951, srow:204 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
25024 | cellmeth_recounts | PrEC: 9, LNCaP: 9, DU145: 0 | |
25024 | cellmeth_diffreps_PrECvsDU145 | A=13, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000941091010072773 | |
25024 | cellexp | id=ENSG00000116731, name=PRDM2, PrEC=3050, str=4239, LNCaP=2463, str=2583, DU145=2002, str=2354 | |
25024 | tcgaexp | gene=PRDM2, entrez=7799, pos=chr1:14026735-14151574(+), B=3734, L=3334, M=3193, H=3190 | |
25024 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
25024 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |