DMR 25124 chr1:22140751-22141350 (600bp)
| DMR Stats | |
|---|---|
| Position | chr1:22140751-22141350 (View on UCSC) |
| Width | 600bp |
| Genomic Context | exon |
| Nearest Genes | LDLRAD2 (0bp away) |
| ANODEV p-value | 2.25382051771e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25124 | LDLRAD2 | 396 | uc001bfg.1 | chr1 | 22138758 | 22151714 | + | 600 | 100.0 | 1.28 | 0 | 0.0 | E1 (0), I1 (23.33), E2 (71), I2 (5.83), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25124 | chr1 | 22138892 | 22140891 | cpgShore | — | values(x.gr)[overs$srow, ]:1072 |
| 25124 | chr1 | 22140608 | 22141277 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:283, expCount:1, expNums:8, expScores:283, srow:57474 |
| 25124 | chr1 | 22140646 | 22140941 | wgEncodeRegTfbsClusteredV3 | RCOR1 | score:187, expCount:1, expNums:492, expScores:187, srow:57475 |
| 25124 | chr1 | 22140657 | 22140946 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:326, expCount:1, expNums:361, expScores:326, srow:57476 |
| 25124 | chr1 | 22140698 | 22141751 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:441, expCount:7, expNums:22,146,147,328,332,610,619, expScores:141,412,441,290,321,167,104, srow:57477 |
| 25124 | chr1 | 22140801 | 22141369 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:447, expCount:1, expNums:157, expScores:145, srow:57478 |
| 25124 | chr1 | 22140821 | 22141255 | wgEncodeRegDnaseClusteredV2 | 52 | score:1000, srow:17476 |
| 25124 | chr1 | 22140849 | 22141172 | wgEncodeRegTfbsClusteredV3 | SP1 | score:176, expCount:1, expNums:153, expScores:176, srow:57479 |
| 25124 | chr1 | 22140885 | 22141494 | wgEncodeRegTfbsClusteredV3 | SP4 | score:251, expCount:1, expNums:155, expScores:251, srow:57480 |
| 25124 | chr1 | 22140888 | 22140912 | phastConsElements100way | lod=186 | score:511, srow:84320 |
| 25124 | chr1 | 22140892 | 22141407 | cpgIsland | CpG: 49 | length:516, cpgNum:49, gcNum:351, perCpg:19, perGc:68, obsExp:0.82, srow:611 |
| 25124 | chr1 | 22140901 | 22141140 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:361, expCount:1, expNums:126, expScores:361, srow:57481 |
| 25124 | chr1 | 22140901 | 22140920 | tfbsConsSites | V$P53_01 | score:694, zScore:2.04, srow:44931 |
| 25124 | chr1 | 22140914 | 22140948 | phastConsElements100way | lod=152 | score:491, srow:84321 |
| 25124 | chr1 | 22140925 | 22141200 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:163, expCount:1, expNums:217, expScores:163, srow:57482 |
| 25124 | chr1 | 22140931 | 22140931 | cosmic | COSM904205 | srow:13265 |
| 25124 | chr1 | 22140940 | 22141195 | wgEncodeRegTfbsClusteredV3 | ZBTB33 | score:137, expCount:1, expNums:246, expScores:137, srow:57483 |
| 25124 | chr1 | 22140944 | 22140944 | cosmic | COSM1213247 | srow:13266 |
| 25124 | chr1 | 22140950 | 22140952 | phastConsElements100way | lod=27 | score:320, srow:84322 |
| 25124 | chr1 | 22140951 | 22141381 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:75, expNums:2,5,20,24,35,37,39,42,44,137,174,213,262,290,463,493,595,597,601,603,604,605,606,607,609,615,621,635,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,681,682,683,684,685,686,687,689, expScores:479,626,467,488,177,210,316,296,333,837,259,444,338,265,177,274,156,235,216,559,787,373,259,378,502,122,254,187,113,468,551,313,620,347,444,261,647,659,933,1000,744,1000,740,732,373,926,601,618,157,1000,751,477,218,130,164,395,307,590,472,445,541,506,554,1000,773,820,422,229,476,365,245,679,787,1000,138, srow:57484 |
| 25124 | chr1 | 22140956 | 22140957 | phastConsElements100way | lod=14 | score:255, srow:84323 |
| 25124 | chr1 | 22140959 | 22140960 | phastConsElements100way | lod=20 | score:290, srow:84324 |
| 25124 | chr1 | 22140962 | 22140981 | phastConsElements100way | lod=135 | score:479, srow:84325 |
| 25124 | chr1 | 22140972 | 22140972 | cosmic | COSM338653 | srow:13267 |
| 25124 | chr1 | 22140985 | 22141320 | wgEncodeRegTfbsClusteredV3 | YY1 | score:212, expCount:1, expNums:162, expScores:212, srow:57485 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25124 | cellmeth_recounts | PrEC: 22, LNCaP: 53, DU145: 10 |  |
| 25124 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=31, Length=480, Event=Up, log2FC=Inf, padj=4.50368607357446e-09 |  |
| 25124 | cellmeth_diffreps_PrECvsLNCaP | A=37, B=7, Length=280, Event=Down, log2FC=-2.4, padj=0.000105030392384157 |  |
| 25124 | cellmeth_diffreps_PrECvsDU145 | A=39, B=2, Length=400, Event=Down, log2FC=-4.29, padj=1.74472441487967e-08 |  |
| 25124 | cellmeth_diffreps_LNCaPvsDU145 | A=11.76, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00547907730955432 |  |
| 25124 | cellexp | id=ENSG00000187942, name=LDLRAD2, PrEC=11, str=34, LNCaP=0, str=1, DU145=66, str=33 |  |
| 25124 | tcgameth | site:cg13403586, B=0.06, L=0.35, H=0.32 |  |
| 25124 | tcgameth | site:cg15467646, B=0.06, L=0.47, H=0.43 |  |
| 25124 | tcgameth | site:cg17456100, B=0.04, L=0.28, H=0.26 |  |
| 25124 | tcgameth | site:cg24334174, B=0.87, L=0.92, H=0.91 |  |
| 25124 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25124 | tcgaexp | gene=LDLRAD2, entrez=401944, pos=chr1:22138758-22151714(+), B=490, L=915, M=505, H=384 |  |
| 25124 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |