DMR Stats | |
---|---|
Position | chr1:32829351-32829500 (View on UCSC) |
Width | 150bp |
Genomic Context | 3' end |
Nearest Genes | TSSK3 (0bp away) |
ANODEV p-value | 0.0199178821258 |
Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
25204 | TSSK3 | 593 | uc001bvf.3 | chr1 | 32827862 | 32829924 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
25204 | chr1 | 32828018 | 32830017 | cpgShore | — | values(x.gr)[overs$srow, ]:1462 |
25204 | chr1 | 32829000 | 32829895 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:530, expCount:1, expNums:229, expScores:530, srow:95796 |
25204 | chr1 | 32829346 | 32830035 | wgEncodeRegDnaseClusteredV2 | 22 | score:423, srow:26644 |
25204 | chr1 | 32829360 | 32829360 | cosmic | COSM138183 | srow:20560 |
25204 | chr1 | 32829360 | 32829361 | phastConsElements100way | lod=19 | score:285, srow:134191 |
25204 | chr1 | 32829361 | 32829381 | tfbsConsSites | V$STAT1_01 | score:769, zScore:1.89, srow:69936 |
25204 | chr1 | 32829370 | 32829387 | tfbsConsSites | V$NF1_Q6 | score:867, zScore:1.65, srow:69937 |
25204 | chr1 | 32829372 | 32829391 | tfbsConsSites | V$PPARA_01 | score:752, zScore:2, srow:69938 |
25204 | chr1 | 32829372 | 32829374 | phastConsElements100way | lod=19 | score:285, srow:134192 |
25204 | chr1 | 32829381 | 32829382 | phastConsElements100way | lod=27 | score:320, srow:134193 |
25204 | chr1 | 32829390 | 32829399 | tfbsConsSites | V$NRF2_01 | score:901, zScore:1.89, srow:69939 |
25204 | chr1 | 32829393 | 32829394 | phastConsElements100way | lod=29 | score:327, srow:134194 |
25204 | chr1 | 32829394 | 32829409 | tfbsConsSites | V$TAL1ALPHAE47_01 | score:896, zScore:2.24, srow:69940 |
25204 | chr1 | 32829394 | 32829409 | tfbsConsSites | V$TAL1BETAE47_01 | score:875, zScore:2.27, srow:69941 |
25204 | chr1 | 32829394 | 32829409 | tfbsConsSites | V$TAL1BETAITF2_01 | score:855, zScore:1.88, srow:69942 |
25204 | chr1 | 32829399 | 32829406 | phastConsElements100way | lod=67 | score:410, srow:134195 |
25204 | chr1 | 32829406 | 32829406 | cosmic | COSM426105 | srow:20561 |
25204 | chr1 | 32829411 | 32829415 | phastConsElements100way | lod=43 | score:366, srow:134196 |
25204 | chr1 | 32829418 | 32829418 | cosmic | COSM294920 | srow:20562 |
25204 | chr1 | 32829420 | 32829427 | phastConsElements100way | lod=63 | score:404, srow:134197 |
25204 | chr1 | 32829433 | 32829443 | tfbsConsSites | V$SREBP1_02 | score:820, zScore:1.81, srow:69943 |
25204 | chr1 | 32829436 | 32829458 | tfbsConsSites | V$PPARG_02 | score:694, zScore:1.9, srow:69944 |
25204 | chr1 | 32829438 | 32829441 | phastConsElements100way | lod=39 | score:356, srow:134198 |
25204 | chr1 | 32829443 | 32829470 | tfbsConsSites | V$PAX5_02 | score:763, zScore:1.68, srow:69945 |
25204 | chr1 | 32829444 | 32829454 | phastConsElements100way | lod=125 | score:471, srow:134199 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
25204 | cellmeth_recounts | PrEC: 8, LNCaP: 30, DU145: 1 | |
25204 | cellmeth_diffreps_PrECvsDU145 | A=11, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00313959514768542 | |
25204 | cellmeth_diffreps_LNCaPvsDU145 | A=27.8, B=0.94, Length=380, Event=Down, log2FC=-4.89, padj=5.16679192666264e-06 | |
25204 | cellexp | id=ENSG00000162526, name=TSSK3, PrEC=1, str=7, LNCaP=28, str=12, DU145=6, str=3 | |
25204 | cellexp | id=ENSG00000225828, name=FAM229A, PrEC=23, str=50, LNCaP=219, str=74, DU145=69, str=30 | |
25204 | tcgaexp | gene=TSSK3, entrez=81629, pos=chr1:32827862-32829924(+), B=37, L=33, M=35, H=47 | |
25204 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |