DMR 25206 chr1:33358401-33358550 (150bp)

DMR Stats
Positionchr1:33358401-33358550 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesHPCA (0bp away)
ANODEV p-value0.00430043782056
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25206 HPCA 604 uc001bwh.3 chr1 33352098 33360247 + 150 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25206 chr1 33356470 33358469 cpgShore — values(x.gr)[overs$srow, ]:1487
25206 chr1 33358104 33359452 wgEncodeRegTfbsClusteredV3 EZH2 score:510, expCount:3, expNums:36,38,43, expScores:231,200,510, srow:97678
25206 chr1 33358126 33358795 wgEncodeRegDnaseClusteredV2 71 score:1000, srow:27000
25206 chr1 33358306 33358915 wgEncodeRegTfbsClusteredV3 SP4 score:237, expCount:1, expNums:155, expScores:237, srow:97679
25206 chr1 33358334 33358689 wgEncodeRegTfbsClusteredV3 MAX score:642, expCount:3, expNums:223,352,511, expScores:461,642,243, srow:97680
25206 chr1 33358355 33358665 wgEncodeRegTfbsClusteredV3 PAX5 score:283, expCount:2, expNums:100,101, expScores:283,153, srow:97681
25206 chr1 33358365 33358860 wgEncodeRegTfbsClusteredV3 HMGN3 score:145, expCount:1, expNums:501, expScores:145, srow:97682
25206 chr1 33358371 33358754 wgEncodeRegTfbsClusteredV3 MYC score:150, expCount:2, expNums:347,487, expScores:145,150, srow:97683
25206 chr1 33358388 33358697 wgEncodeRegTfbsClusteredV3 BHLHE40 score:203, expCount:1, expNums:472, expScores:203, srow:97684
25206 chr1 33358393 33358587 wgEncodeRegTfbsClusteredV3 E2F6 score:327, expCount:2, expNums:215,495, expScores:327,319, srow:97685
25206 chr1 33358401 33358640 wgEncodeRegTfbsClusteredV3 USF1 score:143, expCount:1, expNums:161, expScores:143, srow:97686
25206 chr1 33358406 33358765 wgEncodeRegTfbsClusteredV3 IRF1 score:155, expCount:1, expNums:506, expScores:155, srow:97687
25206 chr1 33358412 33359195 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:89, expNums:2,5,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,615,618,621,627,628,629,630,631,635,636,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,665,667,668,669,671,672,673,674,675,676,677,678,679,680,682,683,684,685,686,687,688, expScores:415,1000,193,158,342,322,905,207,160,325,150,587,335,952,770,464,1000,1000,1000,544,155,268,1000,446,404,218,290,375,154,501,234,523,129,830,116,115,272,806,433,434,322,309,181,181,232,128,172,327,198,136,135,232,169,118,509,523,729,725,602,689,216,167,141,201,104,108,297,126,237,282,124,262,167,197,223,149,215,383,511,112,217,167,223,272,92,118,172,414,846, srow:97688
25206 chr1 33358421 33358790 wgEncodeRegTfbsClusteredV3 MAZ score:243, expCount:1, expNums:512, expScores:243, srow:97689
25206 chr1 33358422 33358731 wgEncodeRegTfbsClusteredV3 POU2F2 score:939, expCount:2, expNums:106,125, expScores:939,527, srow:97690
25206 chr1 33358425 33358833 wgEncodeRegTfbsClusteredV3 YY1 score:180, expCount:2, expNums:119,162, expScores:169,180, srow:97691
25206 chr1 33358431 33358754 wgEncodeRegTfbsClusteredV3 SP1 score:145, expCount:1, expNums:153, expScores:145, srow:97692
25206 chr1 33358443 33358778 wgEncodeRegTfbsClusteredV3 E2F4 score:108, expCount:1, expNums:494, expScores:108, srow:97693
25206 chr1 33358468 33359131 wgEncodeRegTfbsClusteredV3 CCNT2 score:157, expCount:1, expNums:476, expScores:117, srow:97694
25206 chr1 33358469 33358742 wgEncodeRegTfbsClusteredV3 TCF12 score:257, expCount:2, expNums:116,159, expScores:257,183, srow:97695
25206 chr1 33358470 33359449 cpgIsland CpG: 89 length:980, cpgNum:89, gcNum:675, perCpg:18.2, perGc:68.9, obsExp:0.79, srow:828
25206 chr1 33358481 33358497 phastConsElements100way lod=14 score:255, srow:136956
25206 chr1 33358483 33358502 tfbsConsSites V$ARNT_02 score:803, zScore:2.15, srow:71188
25206 chr1 33358483 33358502 tfbsConsSites V$MYCMAX_03 score:831, zScore:2.38, srow:71189
25206 chr1 33358486 33358499 tfbsConsSites V$MYCMAX_01 score:817, zScore:2.02, srow:71190
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  • 25 of 36 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25206 cellmeth_recounts PrEC: 3, LNCaP: 112, DU145: 0
25206 cellmeth_diffreps_PrECvsLNCaP A=5, B=227, Length=1420, Event=Up, log2FC=5.5, padj=0
25206 cellmeth_diffreps_LNCaPvsDU145 A=254.43, B=0, Length=1620, Event=Down, log2FC=-Inf, padj=0
25206 cellexp id=ENSG00000121905, name=HPCA, PrEC=5, str=14, LNCaP=9, str=6, DU145=44, str=19
25206 tcgaexp gene=HPCA, entrez=3208, pos=chr1:33352098-33360247(+), B=20, L=12, M=15, H=11
25206 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305