DMR 25290 chr1:45251751-45252450 (700bp)
| DMR Stats | |
|---|---|
| Position | chr1:45251751-45252450 (View on UCSC) |
| Width | 700bp |
| Genomic Context | exon |
| Nearest Genes | BEST4 (0bp away) |
| ANODEV p-value | 3.52872498114e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25290 | BEST4 | 796 | uc001cmm.3 | chr1 | 45249257 | 45253426 | - | 700 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (11.86), E3 (33.43), I3 (33.57), E4 (21.43), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25290 | chr1 | 45250353 | 45251962 | cpgShore | — | values(x.gr)[overs$srow, ]:1878 |
| 25290 | chr1 | 45251278 | 45252330 | oreganno | OREG0013447 | id:OREG0013447, srow:775 |
| 25290 | chr1 | 45251706 | 45252437 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:923, expCount:16, expNums:61,62,105,146,147,163,256,326,330,332,336,338,340,366,524,596, expScores:923,544,858,358,298,301,236,344,175,401,230,228,209,151,196,289, srow:128507 |
| 25290 | chr1 | 45251715 | 45252254 | wgEncodeRegTfbsClusteredV3 | EP300 | score:451, expCount:3, expNums:29,60,190, expScores:451,252,276, srow:128508 |
| 25290 | chr1 | 45251728 | 45252453 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:244, expCount:1, expNums:357, expScores:177, srow:128509 |
| 25290 | chr1 | 45251732 | 45252344 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:98, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:724,1000,1000,931,1000,1000,1000,1000,1000,147,786,1000,1000,1000,1000,455,400,200,939,924,1000,692,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,956,848,561,1000,1000,595,711,553,798,712,1000,1000,931,1000,1000,1000,1000,1000,1000,1000,1000,324,1000,222,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,876,1000,981,1000,335,1000,1000,1000,1000,1000,1000,1000,1000,1000,302,405,1000,1000,925,1000,1000,1000,1000,1000, srow:128510 |
| 25290 | chr1 | 45251749 | 45252443 | wgEncodeRegTfbsClusteredV3 | MYC | score:419, expCount:7, expNums:347,485,487,488,489,560,600, expScores:220,133,223,160,337,419,196, srow:128511 |
| 25290 | chr1 | 45251753 | 45251757 | phastConsElements100way | lod=35 | score:345, srow:198930 |
| 25290 | chr1 | 45251762 | 45251763 | phastConsElements100way | lod=32 | score:337, srow:198931 |
| 25290 | chr1 | 45251765 | 45251766 | phastConsElements100way | lod=15 | score:262, srow:198932 |
| 25290 | chr1 | 45251766 | 45251779 | tfbsConsSites | V$ATF_01 | score:870, zScore:2.47, srow:110730 |
| 25290 | chr1 | 45251766 | 45251766 | cosmic | COSM189165 | srow:30206 |
| 25290 | chr1 | 45251767 | 45251778 | tfbsConsSites | V$CREB_Q4 | score:897, zScore:2.32, srow:110731 |
| 25290 | chr1 | 45251768 | 45251772 | phastConsElements100way | lod=31 | score:333, srow:198933 |
| 25290 | chr1 | 45251769 | 45251787 | tfbsConsSites | V$PAX2_01 | score:822, zScore:2.83, srow:110732 |
| 25290 | chr1 | 45251770 | 45252139 | wgEncodeRegTfbsClusteredV3 | MAZ | score:312, expCount:1, expNums:512, expScores:312, srow:128512 |
| 25290 | chr1 | 45251771 | 45252146 | wgEncodeRegTfbsClusteredV3 | TBP | score:140, expCount:1, expNums:359, expScores:140, srow:128513 |
| 25290 | chr1 | 45251771 | 45251783 | tfbsConsSites | V$PAX3_01 | score:899, zScore:3.75, srow:110733 |
| 25290 | chr1 | 45251772 | 45251772 | cosmic | COSM1296486 | srow:30207 |
| 25290 | chr1 | 45251773 | 45252375 | wgEncodeRegTfbsClusteredV3 | MAX | score:677, expCount:7, expNums:223,278,296,352,439,460,511, expScores:677,360,495,184,138,271,228, srow:128514 |
| 25290 | chr1 | 45251774 | 45251775 | phastConsElements100way | lod=30 | score:330, srow:198934 |
| 25290 | chr1 | 45251777 | 45251780 | phastConsElements100way | lod=26 | score:316, srow:198935 |
| 25290 | chr1 | 45251778 | 45252181 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:178, expCount:1, expNums:247, expScores:178, srow:128515 |
| 25290 | chr1 | 45251782 | 45252111 | wgEncodeRegTfbsClusteredV3 | IRF4 | score:163, expCount:1, expNums:92, expScores:163, srow:128516 |
| 25290 | chr1 | 45251783 | 45252442 | wgEncodeRegTfbsClusteredV3 | KAP1 | score:375, expCount:1, expNums:588, expScores:375, srow:128517 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25290 | cellmeth_recounts | PrEC: 15, LNCaP: 117, DU145: 0 |  |
| 25290 | cellmeth_diffreps_PrECvsLNCaP | A=21, B=86, Length=460, Event=Up, log2FC=2.03, padj=6.10668622411807e-09 |  |
| 25290 | cellmeth_diffreps_PrECvsDU145 | A=22, B=0, Length=400, Event=Down, log2FC=-Inf, padj=2.6934033431747e-06 |  |
| 25290 | cellmeth_diffreps_LNCaPvsDU145 | A=94.08, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0 |  |
| 25290 | cellexp | id=ENSG00000142959, name=BEST4, PrEC=75, str=28, LNCaP=25, str=5, DU145=32, str=11 |  |
| 25290 | tcgameth | site:cg06170941, B=0.33, L=0.47, H=0.49 |  |
| 25290 | tcgaexp | gene=BEST4, entrez=266675, pos=chr1:45249257-45253426(-), B=15, L=12, M=8, H=6 |  |
| 25290 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |