DMR 25475 chr1:94146151-94146550 (400bp)

DMR Stats
Positionchr1:94146151-94146550 (View on UCSC)
Width400bp
Genomic Contextpromoter
Nearest GenesBCAR3 (0bp away)
ANODEV p-value2.23247011035e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25475 BCAR3 1171 uc001dpz.4 chr1 94027343 94146926 - 400 100.0 0.69 0 31.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
25475 BCAR3 1171 uc001dqa.4 chr1 94027343 94147394 - 400 100.0 0.69 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
25475 BCAR3 1171 uc001dqb.4 chr1 94027343 94312706 - 400 100.0 0.25 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25475 chr1 94144322 94146321 cpgShore — values(x.gr)[overs$srow, ]:2447
25475 chr1 94145586 94146195 wgEncodeRegDnaseClusteredV2 71 score:1000, srow:56010
25475 chr1 94145619 94147825 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:37, expNums:11,22,41,61,62,78,105,131,146,163,168,192,206,207,259,306,328,330,332,336,338,340,362,402,403,445,461,465,563,564,585,596,599,613,619,633,637, expScores:241,122,218,297,228,417,828,419,229,347,360,403,165,268,260,453,852,777,420,435,339,349,116,346,292,104,167,213,284,335,236,236,182,325,283,552,290, srow:195201
25475 chr1 94145797 94146647 oreganno OREG0013605 id:OREG0013605, srow:1057
25475 chr1 94146007 94146666 wgEncodeRegTfbsClusteredV3 SMARCB1 score:244, expCount:1, expNums:391, expScores:244, srow:195203
25475 chr1 94146092 94146767 wgEncodeRegTfbsClusteredV3 KAP1 score:374, expCount:1, expNums:365, expScores:374, srow:195204
25475 chr1 94146155 94146160 phastConsElements100way lod=14 score:255, srow:398566
25475 chr1 94146162 94146681 wgEncodeRegTfbsClusteredV3 ATF2 score:229, expCount:1, expNums:79, expScores:229, srow:195205
25475 chr1 94146164 94146177 tfbsConsSites V$ROAZ_01 score:739, zScore:1.64, srow:224466
25475 chr1 94146166 94146179 phastConsElements100way lod=36 score:348, srow:398567
25475 chr1 94146184 94146194 phastConsElements100way lod=26 score:316, srow:398568
25475 chr1 94146209 94146221 tfbsConsSites V$ZID_01 score:869, zScore:2.07, srow:224467
25475 chr1 94146211 94146646 wgEncodeRegTfbsClusteredV3 UBTF score:184, expCount:1, expNums:549, expScores:184, srow:195206
25475 chr1 94146215 94146618 wgEncodeRegTfbsClusteredV3 MXI1 score:148, expCount:1, expNums:397, expScores:148, srow:195207
25475 chr1 94146222 94146619 wgEncodeRegTfbsClusteredV3 ZNF263 score:1000, expCount:1, expNums:368, expScores:1000, srow:195208
25475 chr1 94146245 94146635 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:94, expNums:2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,680,682,683,684,685,686,687,688,689, expScores:691,941,783,528,360,590,567,362,719,340,738,877,472,731,243,239,560,473,414,439,131,660,944,553,1000,982,1000,786,1000,1000,1000,1000,1000,719,897,216,476,815,1000,1000,1000,876,1000,1000,719,359,1000,959,558,1000,1000,1000,489,1000,136,646,991,675,701,1000,618,618,342,889,699,1000,598,978,1000,567,1000,424,357,620,425,383,1000,923,1000,953,550,656,735,593,396,313,1000,756,315,674,1000,788,581,194, srow:195209
25475 chr1 94146246 94146685 wgEncodeRegTfbsClusteredV3 CBX3 score:277, expCount:1, expNums:211, expScores:277, srow:195210
25475 chr1 94146247 94146616 wgEncodeRegTfbsClusteredV3 CHD2 score:134, expCount:1, expNums:380, expScores:134, srow:195211
25475 chr1 94146260 94146570 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:11, expNums:108,149,193,231,264,280,310,355,405,448,466, expScores:319,902,820,300,1000,239,114,520,718,257,764, srow:195212
25475 chr1 94146261 94147035 wgEncodeRegDnaseClusteredV2 118 score:1000, srow:56011
25475 chr1 94146270 94146731 wgEncodeRegTfbsClusteredV3 MAX score:321, expCount:2, expNums:395,511, expScores:321,150, srow:195213
25475 chr1 94146280 94146583 wgEncodeRegTfbsClusteredV3 SMC3 score:632, expCount:3, expNums:313,408,535, expScores:181,632,95, srow:195214
25475 chr1 94146280 94146735 wgEncodeRegTfbsClusteredV3 GTF2F1 score:176, expCount:1, expNums:389, expScores:176, srow:195215
25475 chr1 94146292 94146619 wgEncodeRegTfbsClusteredV3 ZNF143 score:423, expCount:2, expNums:361,552, expScores:423,251, srow:195216
25475 chr1 94146293 94146622 wgEncodeRegTfbsClusteredV3 RFX5 score:150, expCount:1, expNums:406, expScores:150, srow:195217
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  • 25 of 34 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25475 cellmeth_recounts PrEC: 0, LNCaP: 118, DU145: 0
25475 cellmeth_diffreps_PrECvsLNCaP A=0, B=160, Length=940, Event=Up, log2FC=Inf, padj=0
25475 cellmeth_diffreps_LNCaPvsDU145 A=171.05, B=0, Length=940, Event=Down, log2FC=-Inf, padj=0
25475 cellexp id=ENSG00000137936, name=BCAR3, PrEC=10989, str=8783, LNCaP=486, str=350, DU145=5021, str=6953
25475 tcgameth site:cg18060199, B=0.23, L=0.56, H=0.54
25475 tcgaexp gene=BCAR3, entrez=8412, pos=chr1:94027343-94312706(-), B=1309, L=868, M=746, H=673
25475 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305