DMR 26379 chr2:105473001-105473300 (300bp)

DMR Stats
Positionchr2:105473001-105473300 (View on UCSC)
Width300bp
Genomic Context3' end
Nearest GenesPOU3F3 (0bp away)
ANODEV p-value0.000287676041294
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26379 POU3F3 16779 uc010ywg.2 chr2 105471969 105473471 + 300 100.0 0.05 0 0.0 E1 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26379 chr2 105468852 105473488 cpgIsland CpG: 334 length:4637, cpgNum:334, gcNum:2430, perCpg:14.4, perGc:52.4, obsExp:1.05, srow:15326
26379 chr2 105471960 105474313 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:705,624,187,152,875,270,234,857,396, srow:2251874
26379 chr2 105472837 105473463 wgEncodeRegTfbsClusteredV3 SUZ12 score:417, expCount:2, expNums:358,578, expScores:113,417, srow:2251875
26379 chr2 105472912 105473527 wgEncodeRegTfbsClusteredV3 CHD1 score:305, expCount:1, expNums:4, expScores:305, srow:2251876
26379 chr2 105472926 105473005 phastConsElements100way lod=1012 score:678, srow:4710310
26379 chr2 105472936 105473535 wgEncodeRegTfbsClusteredV3 CTBP2 score:141, expCount:1, expNums:348, expScores:141, srow:2251877
26379 chr2 105472941 105473495 wgEncodeRegDnaseClusteredV2 40 score:464, srow:640403
26379 chr2 105472992 105473021 tfbsConsSites V$PAX4_04 score:729, zScore:1.75, srow:2723345
26379 chr2 105473006 105473006 cosmic COSM121614 srow:664968
26379 chr2 105473007 105473101 phastConsElements100way lod=1130 score:689, srow:4710311
26379 chr2 105473009 105473009 cosmic COSM1398563 srow:664969
26379 chr2 105473018 105473018 cosmic COSM1004731 srow:664970
26379 chr2 105473019 105473019 cosmic COSM328844 srow:664971
26379 chr2 105473021 105473021 cosmic COSM714910 srow:664972
26379 chr2 105473034 105473034 cosmic COSM1398564 srow:664973
26379 chr2 105473035 105473035 cosmic COSM1398565 srow:664974
26379 chr2 105473036 105473036 cosmic COSM80375 srow:664975
26379 chr2 105473037 105473052 tfbsConsSites V$GRE_C score:809, zScore:1.68, srow:2723346
26379 chr2 105473041 105473058 tfbsConsSites V$CMYB_01 score:815, zScore:2.14, srow:2723347
26379 chr2 105473049 105473049 cosmic COSM322756 srow:664976
26379 chr2 105473057 105473057 cosmic COSM1004732 srow:664977
26379 chr2 105473061 105473061 cosmic COSM1004733 srow:664978
26379 chr2 105473102 105473102 cosmic COSM1004734 srow:664979
26379 chr2 105473104 105473170 phastConsElements100way lod=824 score:658, srow:4710312
26379 chr2 105473110 105473119 tfbsConsSites V$NKX22_01 score:880, zScore:1.78, srow:2723348
  • Page 1 of 2
  • 25 of 44 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26379 cellmeth_recounts PrEC: 1, LNCaP: 1155, DU145: 33
26379 cellmeth_diffreps_PrECvsLNCaP A=34, B=3498, Length=4060, Event=Up, log2FC=6.68, padj=0
26379 cellmeth_diffreps_PrECvsDU145 A=1, B=24, Length=300, Event=Up, log2FC=4.58, padj=2.0670567223746e-05
26379 cellmeth_diffreps_LNCaPvsDU145 A=3737.38, B=115.06, Length=4000, Event=Down, log2FC=-5.02, padj=0
26379 cellexp id=ENSG00000198914, name=POU3F3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
26379 cellexp id=ENSG00000269707, name=RP11-13J10.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
26379 tcgameth site:cg16767916, B=0.42, L=0.61, H=0.59
26379 tcgaexp gene=POU3F3, entrez=5455, pos=chr2:105471969-105473471(+), B=252, L=0, M=1, H=1