DMR 26407 chr2:111875201-111876150 (950bp)

DMR Stats
Positionchr2:111875201-111876150 (View on UCSC)
Width950bp
Genomic Context3' end
Nearest GenesACOXL (0bp away)
ANODEV p-value0.000651966405815
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26407 ACOXL 16851 uc010yxk.1 chr2 111490150 111875799 + 599 63.05 0.31 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (63.05) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26407 chr2 111873207 111875206 cpgShore — values(x.gr)[overs$srow, ]:27692
26407 chr2 111874191 111875208 oreganno OREG0014889 id:OREG0014889, srow:12821
26407 chr2 111874365 111875222 wgEncodeRegTfbsClusteredV3 E2F1 score:544, expCount:1, expNums:572, expScores:348, srow:2259689
26407 chr2 111874426 111877355 wgEncodeRegDnaseClusteredV2 125 score:1000, srow:643475
26407 chr2 111874582 111875255 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:98, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:999,1000,1000,990,1000,657,978,712,838,656,510,1000,1000,796,117,996,906,326,1000,1000,648,690,471,1000,1000,839,1000,1000,1000,1000,1000,1000,169,167,149,619,714,587,597,875,1000,179,1000,209,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,830,849,1000,770,1000,252,1000,1000,1000,1000,1000,1000,1000,1000,454,1000,674,1000,1000,804,1000,1000,943,734,793, srow:2259697
26407 chr2 111874687 111875379 wgEncodeRegTfbsClusteredV3 STAT1 score:270, expCount:1, expNums:410, expScores:178, srow:2259705
26407 chr2 111874916 111875714 wgEncodeRegTfbsClusteredV3 EZH2 score:270, expCount:2, expNums:3,43, expScores:219,270, srow:2259706
26407 chr2 111874923 111875522 wgEncodeRegTfbsClusteredV3 CTBP2 score:139, expCount:1, expNums:348, expScores:139, srow:2259707
26407 chr2 111874935 111875464 wgEncodeRegTfbsClusteredV3 TFAP2A score:182, expCount:1, expNums:369, expScores:182, srow:2259708
26407 chr2 111874987 111875502 wgEncodeRegTfbsClusteredV3 TFAP2C score:217, expCount:1, expNums:370, expScores:217, srow:2259709
26407 chr2 111875181 111875690 wgEncodeRegTfbsClusteredV3 E2F6 score:558, expCount:1, expNums:386, expScores:558, srow:2259710
26407 chr2 111875183 111875209 phastConsElements100way lod=142 score:484, srow:4725042
26407 chr2 111875207 111880965 cpgIsland CpG: 504 length:5759, cpgNum:504, gcNum:3553, perCpg:17.5, perGc:61.7, obsExp:0.92, srow:15379
26407 chr2 111875210 111875228 tfbsConsSites V$PAX2_01 score:810, zScore:2.57, srow:2730902
26407 chr2 111875214 111875242 phastConsElements100way lod=115 score:463, srow:4725043
26407 chr2 111875233 111875629 wgEncodeRegTfbsClusteredV3 MAX score:332, expCount:2, expNums:278,395, expScores:224,332, srow:2259711
26407 chr2 111875244 111875257 phastConsElements100way lod=57 score:394, srow:4725044
26407 chr2 111875250 111875262 tfbsConsSites V$CEBP_01 score:906, zScore:1.89, srow:2730903
26407 chr2 111875253 111875622 wgEncodeRegTfbsClusteredV3 E2F1 score:191, expCount:1, expNums:384, expScores:191, srow:2259712
26407 chr2 111875269 111875275 phastConsElements100way lod=22 score:300, srow:4725045
26407 chr2 111875271 111875904 wgEncodeRegTfbsClusteredV3 POLR2A score:348, expCount:2, expNums:62,168, expScores:230,348, srow:2259713
26407 chr2 111875280 111875284 phastConsElements100way lod=16 score:268, srow:4725046
26407 chr2 111875285 111875294 tfbsConsSites V$NFKAPPAB50_01 score:876, zScore:1.94, srow:2730904
26407 chr2 111875286 111875295 tfbsConsSites V$CREL_01 score:893, zScore:1.74, srow:2730905
26407 chr2 111875286 111875287 phastConsElements100way lod=24 score:308, srow:4725047
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  • 25 of 58 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26407 cellmeth_recounts PrEC: 124, LNCaP: 553, DU145: 27
26407 cellmeth_diffreps_PrECvsLNCaP A=60, B=340, Length=920, Event=Up, log2FC=2.5, padj=0
26407 cellmeth_diffreps_PrECvsDU145 A=57, B=10, Length=400, Event=Down, log2FC=-2.51, padj=1.52947499576406e-07
26407 cellmeth_diffreps_PrECvsDU145 A=1083, B=57, Length=1940, Event=Down, log2FC=-4.25, padj=0
26407 cellmeth_diffreps_LNCaPvsDU145 A=2014.08, B=70.16, Length=3000, Event=Down, log2FC=-4.84, padj=0
26407 cellexp id=ENSG00000153093, name=ACOXL, PrEC=2, str=5, LNCaP=81, str=81, DU145=140, str=290
26407 tcgameth site:cg03171003, B=0.64, L=0.72, H=0.72
26407 tcgameth site:cg04202892, B=0.6, L=0.69, H=0.71
26407 tcgameth site:cg04780086, B=0.51, L=0.65, H=0.62
26407 tcgameth site:cg18646521, B=0.44, L=0.57, H=0.56
26407 tcgameth site:cg27624162, B=0.54, L=0.68, H=0.66
26407 tcgaexp gene=ACOXL, entrez=55289, pos=chr2:111490150-111875799(+), B=168, L=194, M=182, H=157
26407 tcgaexp gene=RGPD5, entrez=84220, pos=chr2:110561556-113179689(+), B=246, L=163, M=204, H=232