DMR 26748 chr2:235404251-235404800 (550bp)

DMR Stats
Positionchr2:235404251-235404800 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesARL4C (0bp away)
ANODEV p-value1.30140342947e-11
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26748 ARL4C 17769 uc002vvm.4 chr2 235401686 235405233 - 550 100.0 0.1 0 12.18 E1 (26.36), I1 (32), E2 (41.82) 0.0
26748 ARL4C 17769 uc002vvn.3 chr2 235401686 235405693 - 550 100.0 0.1 0 0.0 E1 (100) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26748 chr2 235402503 235404502 cpgShore — values(x.gr)[overs$srow, ]:29013
26748 chr2 235403899 235405913 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:19, expNums:61,62,78,147,163,249,330,338,340,366,461,465,596,599,619,632,633,634,637, expScores:376,231,619,267,306,181,240,282,264,251,197,376,379,425,249,553,319,239,124, srow:2420863
26748 chr2 235403978 235404647 wgEncodeRegTfbsClusteredV3 RBBP5 score:179, expCount:1, expNums:8, expScores:179, srow:2420864
26748 chr2 235404039 235404298 wgEncodeRegTfbsClusteredV3 TCF12 score:144, expCount:1, expNums:159, expScores:144, srow:2420865
26748 chr2 235404052 235404375 wgEncodeRegTfbsClusteredV3 BACH1 score:163, expCount:1, expNums:341, expScores:163, srow:2420866
26748 chr2 235404058 235404333 wgEncodeRegTfbsClusteredV3 EGR1 score:221, expCount:1, expNums:138, expScores:221, srow:2420867
26748 chr2 235404060 235404435 wgEncodeRegTfbsClusteredV3 TBP score:164, expCount:1, expNums:359, expScores:164, srow:2420868
26748 chr2 235404126 235404430 wgEncodeRegDnaseClusteredV2 17 score:519, srow:691506
26748 chr2 235404166 235405121 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:278, expCount:2, expNums:63,250, expScores:278,136, srow:2420869
26748 chr2 235404245 235404260 tfbsConsSites V$ARP1_01 score:804, zScore:1.97, srow:3016621
26748 chr2 235404247 235404258 phastConsElements100way lod=17 score:274, srow:5207776
26748 chr2 235404272 235404286 phastConsElements100way lod=51 score:383, srow:5207777
26748 chr2 235404280 235405405 wgEncodeRegTfbsClusteredV3 EZH2 score:661, expCount:1, expNums:13, expScores:557, srow:2420870
26748 chr2 235404305 235404316 tfbsConsSites V$LMO2COM_01 score:919, zScore:1.7, srow:3016622
26748 chr2 235404313 235404317 phastConsElements100way lod=13 score:247, srow:5207778
26748 chr2 235404323 235404326 phastConsElements100way lod=16 score:268, srow:5207779
26748 chr2 235404344 235404357 tfbsConsSites V$P300_01 score:887, zScore:2.45, srow:3016623
26748 chr2 235404351 235404358 tfbsConsSites V$MZF1_01 score:1000, zScore:2.23, srow:3016624
26748 chr2 235404387 235404406 phastConsElements100way lod=78 score:425, srow:5207780
26748 chr2 235404410 235404413 phastConsElements100way lod=13 score:247, srow:5207781
26748 chr2 235404461 235405855 wgEncodeRegDnaseClusteredV2 121 score:1000, srow:691507
26748 chr2 235404503 235406541 cpgIsland CpG: 184 length:2039, cpgNum:184, gcNum:1225, perCpg:18, perGc:60.1, obsExp:1, srow:16105
26748 chr2 235404517 235404554 phastConsElements100way lod=165 score:499, srow:5207782
26748 chr2 235404568 235404803 wgEncodeRegTfbsClusteredV3 RAD21 score:164, expCount:1, expNums:466, expScores:164, srow:2420871
26748 chr2 235404585 235404597 phastConsElements100way lod=18 score:280, srow:5207783
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  • 25 of 43 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26748 cellmeth_recounts PrEC: 1, LNCaP: 1487, DU145: 6
26748 cellmeth_diffreps_PrECvsLNCaP A=17, B=2261, Length=1600, Event=Up, log2FC=7.06, padj=0
26748 cellmeth_diffreps_LNCaPvsDU145 A=2417.11, B=9.35, Length=1620, Event=Down, log2FC=-8.01, padj=0
26748 cellexp id=ENSG00000188042, name=ARL4C, PrEC=24273, str=25479, LNCaP=161, str=243, DU145=477, str=675
26748 tcgameth site:cg11509907, B=0.09, L=0.37, H=0.38
26748 tcgaexp gene=ARL4C, entrez=10123, pos=chr2:235401686-235405693(-), B=2057, L=1304, M=1190, H=1246