DMR 27334 chr3:194118551-194119150 (600bp)

DMR Stats
Positionchr3:194118551-194119150 (View on UCSC)
Width600bp
Genomic Contextpromoter
Nearest GenesGP5 (0bp away)
ANODEV p-value1.72874552387e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27334 GP5 21173 uc003ftv.1 chr3 194115550 194119995 - 600 100.0 2.67 0 0.0 E1 (0), I1 (23), E2 (77.17) 0.0
27334 GP5 21173 uc021xiz.1 chr3 194117329 194119011 - 461 76.83 1.69 0 100.0 E1 (76.83) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27334 chr3 194117446 194119275 wgEncodeRegDnaseClusteredV2 81 score:1000, srow:861380
27334 chr3 194117602 194118988 cpgIsland CpG: 109 length:1387, cpgNum:109, gcNum:895, perCpg:15.7, perGc:64.5, obsExp:0.76, srow:19259
27334 chr3 194117743 194118987 wgEncodeRegTfbsClusteredV3 EZH2 score:401, expCount:3, expNums:6,17,43, expScores:401,165,270, srow:2976414
27334 chr3 194118317 194118626 wgEncodeRegTfbsClusteredV3 SUZ12 score:108, expCount:1, expNums:358, expScores:108, srow:2976416
27334 chr3 194118550 194118554 phastConsElements100way lod=27 score:320, srow:6338111
27334 chr3 194118558 194118558 cosmic COSM209332 srow:874620
27334 chr3 194118560 194118561 phastConsElements100way lod=37 score:351, srow:6338112
27334 chr3 194118568 194118570 phastConsElements100way lod=22 score:300, srow:6338113
27334 chr3 194118573 194118573 cosmic COSM1421769 srow:874621
27334 chr3 194118573 194118573 cosmic COSM1421768 srow:874622
27334 chr3 194118578 194118579 phastConsElements100way lod=25 score:312, srow:6338114
27334 chr3 194118583 194118591 tfbsConsSites V$AREB6_04 score:972, zScore:2.06, srow:3671884
27334 chr3 194118587 194118590 phastConsElements100way lod=25 score:312, srow:6338115
27334 chr3 194118611 194118612 phastConsElements100way lod=21 score:295, srow:6338116
27334 chr3 194118617 194118618 phastConsElements100way lod=30 score:330, srow:6338117
27334 chr3 194118618 194118623 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:3671885
27334 chr3 194118622 194118645 tfbsConsSites V$STAT5A_02 score:804, zScore:2.74, srow:3671886
27334 chr3 194118626 194118626 phastConsElements100way lod=15 score:262, srow:6338118
27334 chr3 194118632 194118632 phastConsElements100way lod=15 score:262, srow:6338119
27334 chr3 194118634 194118638 phastConsElements100way lod=15 score:262, srow:6338120
27334 chr3 194118641 194118642 phastConsElements100way lod=25 score:312, srow:6338121
27334 chr3 194118648 194118658 tfbsConsSites V$EVI1_05 score:851, zScore:2.04, srow:3671887
27334 chr3 194118659 194118660 phastConsElements100way lod=17 score:274, srow:6338122
27334 chr3 194118663 194118663 cosmic COSM311521 srow:874623
27334 chr3 194118663 194118663 cosmic COSM311520 srow:874624
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Omics Overlaps

Dmrid Omic Set Data Plot
27334 cellmeth_recounts PrEC: 32, LNCaP: 530, DU145: 9
27334 cellmeth_diffreps_PrECvsLNCaP A=169, B=1842, Length=2560, Event=Up, log2FC=3.45, padj=0
27334 cellmeth_diffreps_PrECvsDU145 A=45, B=2, Length=420, Event=Down, log2FC=-4.49, padj=3.8539251522487e-10
27334 cellmeth_diffreps_LNCaPvsDU145 A=1743.61, B=35.55, Length=1880, Event=Down, log2FC=-5.62, padj=0
27334 cellexp id=ENSG00000178732, name=GP5, PrEC=2, str=5, LNCaP=1, str=0, DU145=3, str=5
27334 tcgameth site:cg18780769, B=0.42, L=0.57, H=0.58
27334 tcgaexp gene=GP5, entrez=2814, pos=chr3:194115550-194119995(-), B=8, L=4, M=4, H=6