DMR Stats | |
---|---|
Position | chr9:117501-118300 (View on UCSC) |
Width | 800bp |
Genomic Context | promoter |
Nearest Genes | FOXD4 (0bp away) |
ANODEV p-value | 1.52478218464e-05 |
Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 5.0 (55.56 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
30192 | FOXD4 | 29107 | uc003zfz.4 | chr9 | 116231 | 118417 | - | 800 | 100.0 | 0.06 | 0 | 47.88 | E1 (100) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
30192 | chr9 | 116265 | 118599 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:515, expCount:6, expNums:6,21,36,38,40,43, expScores:266,504,228,218,241,262, srow:4111683 |
30192 | chr9 | 116702 | 118177 | cpgIsland | CpG: 124 | length:1476, cpgNum:124, gcNum:996, perCpg:16.8, perGc:67.5, obsExp:0.74, srow:26289 |
30192 | chr9 | 117481 | 117815 | wgEncodeRegDnaseClusteredV2 | 11 | score:243, srow:1198079 |
30192 | chr9 | 117506 | 117506 | cosmic | COSM455225 | srow:1177958 |
30192 | chr9 | 117506 | 117506 | cosmic | COSM455226 | srow:1177959 |
30192 | chr9 | 117506 | 117507 | phastConsElements100way | lod=16 | score:268, srow:9110741 |
30192 | chr9 | 117509 | 117510 | phastConsElements100way | lod=16 | score:268, srow:9110742 |
30192 | chr9 | 117513 | 117530 | phastConsElements100way | lod=116 | score:464, srow:9110743 |
30192 | chr9 | 117533 | 117534 | phastConsElements100way | lod=24 | score:308, srow:9110744 |
30192 | chr9 | 117536 | 117537 | phastConsElements100way | lod=27 | score:320, srow:9110745 |
30192 | chr9 | 117539 | 117564 | phastConsElements100way | lod=287 | score:554, srow:9110746 |
30192 | chr9 | 117546 | 117565 | tfbsConsSites | V$P53_01 | score:676, zScore:1.73, srow:5283205 |
30192 | chr9 | 117552 | 117567 | tfbsConsSites | V$GRE_C | score:810, zScore:1.7, srow:5283206 |
30192 | chr9 | 117556 | 117575 | tfbsConsSites | V$P53_01 | score:722, zScore:2.53, srow:5283207 |
30192 | chr9 | 117557 | 117585 | tfbsConsSites | V$MYOGNF1_01 | score:737, zScore:1.71, srow:5283208 |
30192 | chr9 | 117569 | 117578 | tfbsConsSites | V$SP1_01 | score:956, zScore:2.11, srow:5283209 |
30192 | chr9 | 117569 | 117570 | phastConsElements100way | lod=15 | score:262, srow:9110747 |
30192 | chr9 | 117571 | 117591 | tfbsConsSites | V$PPARG_01 | score:741, zScore:1.94, srow:5283210 |
30192 | chr9 | 117572 | 117572 | cosmic | COSM1104432 | srow:1177960 |
30192 | chr9 | 117572 | 117572 | cosmic | COSM1104433 | srow:1177961 |
30192 | chr9 | 117573 | 117588 | tfbsConsSites | V$ARP1_01 | score:795, zScore:1.79, srow:5283211 |
30192 | chr9 | 117574 | 117574 | cosmic | COSM1459146 | srow:1177962 |
30192 | chr9 | 117574 | 117574 | cosmic | COSM1459147 | srow:1177963 |
30192 | chr9 | 117575 | 117603 | phastConsElements100way | lod=339 | score:570, srow:9110748 |
30192 | chr9 | 117579 | 117579 | cosmic | COSM1330821 | srow:1177964 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
30192 | cellmeth_recounts | PrEC: 24, LNCaP: 193, DU145: 15 | |
30192 | cellmeth_diffreps_PrECvsLNCaP | A=2, B=89, Length=760, Event=Up, log2FC=5.48, padj=0 | |
30192 | cellmeth_diffreps_PrECvsLNCaP | A=24, B=56, Length=260, Event=Up, log2FC=1.22, padj=0.008870036705605 | |
30192 | cellmeth_diffreps_PrECvsDU145 | A=25, B=4, Length=340, Event=Down, log2FC=-2.64, padj=0.00160404022456948 | |
30192 | cellmeth_diffreps_PrECvsDU145 | A=28, B=3, Length=320, Event=Down, log2FC=-3.22, padj=8.63344400735211e-05 | |
30192 | cellmeth_diffreps_LNCaPvsDU145 | A=192.43, B=12.16, Length=1280, Event=Down, log2FC=-3.98, padj=0 | |
30192 | cellexp | id=ENSG00000170122, name=FOXD4, PrEC=3, str=21, LNCaP=465, str=274, DU145=47, str=57 | |
30192 | tcgameth | site:cg18016181, B=0.24, L=0.58, H=0.59 | |
30192 | tcgameth | site:cg25391162, B=0.5, L=0.64, H=0.64 | |
30192 | tcgaexp | gene=FOXD4, entrez=2298, pos=chr9:116231-118417(-), B=18, L=37, M=34, H=39 |