DMR 34060 chr17:17626301-17628750 (2450bp)

DMR Stats
Positionchr17:17626301-17628750 (View on UCSC)
Width2450bp
Genomic Contextexon
Nearest GenesRAI1 (0bp away)
ANODEV p-value7.14529637478e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
34060 RAI1 12265 uc002grm.3 chr17 17584787 17714765 + 2450 100.0 0.12 0 0.0 E1 (0), I1 (42.49), E2 (5.39), I2 (52.16), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34060 chr17 17625428 17626385 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:1, expNums:6, expScores:789, srow:1645129
34060 chr17 17625522 17626331 wgEncodeRegTfbsClusteredV3 SUZ12 score:143, expCount:1, expNums:578, expScores:143, srow:1645133
34060 chr17 17625606 17628500 cpgIsland CpG: 230 length:2895, cpgNum:230, gcNum:1766, perCpg:15.9, perGc:61, obsExp:0.86, srow:10236
34060 chr17 17626246 17627055 wgEncodeRegDnaseClusteredV2 101 score:1000, srow:482450
34060 chr17 17626301 17626309 phastConsElements100way lod=22 score:300, srow:3599146
34060 chr17 17626341 17626696 wgEncodeRegTfbsClusteredV3 BCL3 score:233, expCount:1, expNums:83, expScores:233, srow:1645138
34060 chr17 17626372 17626379 phastConsElements100way lod=19 score:285, srow:3599147
34060 chr17 17626373 17626385 tfbsConsSites V$CHOP_01 score:833, zScore:1.78, srow:2106579
34060 chr17 17626430 17626440 tfbsConsSites V$FOXO4_01 score:909, zScore:1.68, srow:2106580
34060 chr17 17626478 17626489 phastConsElements100way lod=26 score:316, srow:3599148
34060 chr17 17626525 17626536 tfbsConsSites V$EGR1_01 score:955, zScore:3.74, srow:2106581
34060 chr17 17626525 17626536 tfbsConsSites V$EGR2_01 score:965, zScore:3.84, srow:2106582
34060 chr17 17626525 17626536 tfbsConsSites V$EGR3_01 score:974, zScore:3.93, srow:2106583
34060 chr17 17626525 17626536 tfbsConsSites V$NGFIC_01 score:925, zScore:3.24, srow:2106584
34060 chr17 17626527 17626554 phastConsElements100way lod=52 score:385, srow:3599149
34060 chr17 17626559 17626574 tfbsConsSites V$FREAC2_01 score:882, zScore:2.95, srow:2106585
34060 chr17 17626561 17626572 tfbsConsSites V$CDP_01 score:811, zScore:2.36, srow:2106586
34060 chr17 17626562 17626861 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:188, expCount:1, expNums:253, expScores:188, srow:1645139
34060 chr17 17626562 17626573 tfbsConsSites V$HFH1_01 score:901, zScore:2.36, srow:2106587
34060 chr17 17626563 17626572 tfbsConsSites V$FOXO1_01 score:952, zScore:1.72, srow:2106588
34060 chr17 17626564 17626574 tfbsConsSites V$FOXO4_01 score:934, zScore:2.09, srow:2106589
34060 chr17 17626565 17626574 tfbsConsSites V$SOX5_01 score:957, zScore:2.24, srow:2106590
34060 chr17 17626575 17626611 phastConsElements100way lod=55 score:390, srow:3599150
34060 chr17 17626608 17626917 wgEncodeRegTfbsClusteredV3 SUZ12 score:121, expCount:1, expNums:358, expScores:121, srow:1645140
34060 chr17 17626620 17626643 phastConsElements100way lod=43 score:366, srow:3599151
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  • 25 of 137 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34060 cellmeth_recounts PrEC: 80, LNCaP: 4849, DU145: 61
34060 cellmeth_diffreps_PrECvsLNCaP A=583, B=5143, Length=3860, Event=Up, log2FC=3.14, padj=0
34060 cellmeth_diffreps_PrECvsDU145 A=550, B=23, Length=1340, Event=Down, log2FC=-4.58, padj=0
34060 cellmeth_diffreps_LNCaPvsDU145 A=5498.1, B=59.87, Length=3880, Event=Down, log2FC=-6.52, padj=0
34060 cellexp id=ENSG00000108557, name=RAI1, PrEC=8222, str=4496, LNCaP=5636, str=3754, DU145=1644, str=1097
34060 tcgameth site:cg00073010, B=0.15, L=0.59, H=0.54
34060 tcgameth site:cg13000649, B=0.12, L=0.54, H=0.48
34060 tcgameth site:cg19447962, B=0.35, L=0.78, H=0.71
34060 tcgaexp gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18
34060 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
34060 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
34060 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
34060 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
34060 tcgaexp gene=RAI1, entrez=10743, pos=chr17:17584787-17714765(+), B=3085, L=2862, M=2789, H=2953
34060 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
34060 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
34060 tcgaexp gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223
34060 tcgaexp gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0
34060 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
34060 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
34060 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
34060 tcgaexp gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598
34060 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377
34060 tcgaexp gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90
34060 tcgaexp gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2
34060 tcgaexp gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4