DMR 34110 chr17:27892901-27893600 (700bp)
| DMR Stats | |
|---|---|
| Position | chr17:27892901-27893600 (View on UCSC) |
| Width | 700bp |
| Genomic Context | promoter |
| Nearest Genes | ABHD15 (0bp away) |
| ANODEV p-value | 0.000242374832034 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34110 | ABHD15 | 12501 | uc002hed.2 | chr17 | 27887689 | 27894042 | - | 700 | 100.0 | 0.86 | 0 | 8.29 | E1 (71), I1 (29), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34110 | chr17 | 27891087 | 27893086 | cpgShore | — | values(x.gr)[overs$srow, ]:18946 |
| 34110 | chr17 | 27892661 | 27893395 | wgEncodeRegDnaseClusteredV2 | 63 | score:1000, srow:487256 |
| 34110 | chr17 | 27892832 | 27893121 | wgEncodeRegTfbsClusteredV3 | HNF4G | score:133, expCount:1, expNums:183, expScores:133, srow:1662295 |
| 34110 | chr17 | 27892869 | 27893324 | wgEncodeRegTfbsClusteredV3 | GTF2F1 | score:141, expCount:1, expNums:389, expScores:141, srow:1662296 |
| 34110 | chr17 | 27892891 | 27893300 | wgEncodeRegTfbsClusteredV3 | FOSL2 | score:224, expCount:1, expNums:52, expScores:224, srow:1662297 |
| 34110 | chr17 | 27892900 | 27893537 | wgEncodeRegTfbsClusteredV3 | CTCF | score:976, expCount:58, expNums:0,2,5,9,20,37,44,48,49,137,174,262,290,595,601,603,604,605,606,607,609,612,628,629,630,631,635,638,639,640,643,645,647,648,650,651,652,653,654,655,656,658,659,661,662,663,665,666,672,674,675,676,677,681,685,686,687,688, expScores:512,204,212,368,161,214,136,201,136,168,206,117,275,976,193,256,337,136,126,305,135,260,196,203,154,190,202,386,213,220,136,139,200,147,232,152,189,262,112,101,163,162,312,148,150,262,167,265,125,130,179,176,257,234,229,239,156,188, srow:1662298 |
| 34110 | chr17 | 27892905 | 27893480 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:269, expCount:1, expNums:66, expScores:269, srow:1662299 |
| 34110 | chr17 | 27892915 | 27894043 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:432, expCount:1, expNums:6, expScores:337, srow:1662300 |
| 34110 | chr17 | 27892947 | 27893522 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:273, expCount:1, expNums:46, expScores:273, srow:1662301 |
| 34110 | chr17 | 27892953 | 27893296 | wgEncodeRegTfbsClusteredV3 | YY1 | score:157, expCount:1, expNums:119, expScores:157, srow:1662302 |
| 34110 | chr17 | 27892961 | 27893480 | wgEncodeRegTfbsClusteredV3 | ETS1 | score:313, expCount:1, expNums:51, expScores:313, srow:1662303 |
| 34110 | chr17 | 27892997 | 27893352 | wgEncodeRegTfbsClusteredV3 | TAF7 | score:210, expCount:1, expNums:158, expScores:210, srow:1662304 |
| 34110 | chr17 | 27893007 | 27893664 | wgEncodeRegTfbsClusteredV3 | GABPA | score:331, expCount:4, expNums:54,140,166,180, expScores:331,200,150,222, srow:1662305 |
| 34110 | chr17 | 27893012 | 27893407 | wgEncodeRegTfbsClusteredV3 | MAX | score:150, expCount:1, expNums:395, expScores:150, srow:1662306 |
| 34110 | chr17 | 27893012 | 27893531 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:201, expCount:1, expNums:357, expScores:201, srow:1662307 |
| 34110 | chr17 | 27893033 | 27893248 | wgEncodeRegTfbsClusteredV3 | POU5F1 | score:113, expCount:1, expNums:148, expScores:113, srow:1662308 |
| 34110 | chr17 | 27893064 | 27893439 | wgEncodeRegTfbsClusteredV3 | TBP | score:267, expCount:1, expNums:359, expScores:267, srow:1662309 |
| 34110 | chr17 | 27893084 | 27893561 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:481, expCount:4, expNums:61,62,585,596, expScores:324,319,323,279, srow:1662310 |
| 34110 | chr17 | 27893087 | 27896078 | cpgIsland | CpG: 250 | length:2992, cpgNum:250, gcNum:1855, perCpg:16.7, perGc:62, obsExp:0.87, srow:10382 |
| 34110 | chr17 | 27893098 | 27893111 | phastConsElements100way | lod=127 | score:473, srow:3631853 |
| 34110 | chr17 | 27893106 | 27893429 | wgEncodeRegTfbsClusteredV3 | ZEB1 | score:137, expCount:1, expNums:121, expScores:137, srow:1662311 |
| 34110 | chr17 | 27893109 | 27893109 | cosmic | COSM352646 | srow:489240 |
| 34110 | chr17 | 27893110 | 27893613 | wgEncodeRegTfbsClusteredV3 | REST | score:259, expCount:1, expNums:59, expScores:259, srow:1662312 |
| 34110 | chr17 | 27893119 | 27893132 | phastConsElements100way | lod=108 | score:457, srow:3631854 |
| 34110 | chr17 | 27893134 | 27893138 | phastConsElements100way | lod=14 | score:255, srow:3631855 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34110 | cellmeth_recounts | PrEC: 90, LNCaP: 1780, DU145: 0 |  |
| 34110 | cellmeth_diffreps_PrECvsLNCaP | A=134, B=1782, Length=1400, Event=Up, log2FC=3.73, padj=0 |  |
| 34110 | cellmeth_diffreps_PrECvsDU145 | A=133, B=0, Length=700, Event=Down, log2FC=-Inf, padj=0 |  |
| 34110 | cellmeth_diffreps_LNCaPvsDU145 | A=1905.04, B=0.94, Length=1380, Event=Down, log2FC=-10.99, padj=0 |  |
| 34110 | cellexp | id=ENSG00000167543, name=TP53I13, PrEC=1666, str=1928, LNCaP=2080, str=805, DU145=2005, str=1608 |  |
| 34110 | cellexp | id=ENSG00000168792, name=ABHD15, PrEC=672, str=1303, LNCaP=442, str=511, DU145=1346, str=1502 |  |
| 34110 | cellexp | id=ENSG00000264031, name=RP11-68I3.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 34110 | tcgameth | site:cg04528771, B=0.45, L=0.62, H=0.59 |  |
| 34110 | tcgameth | site:cg23112192, B=0.39, L=0.61, H=0.56 |  |
| 34110 | tcgameth | site:cg23473955, B=0.39, L=0.7, H=0.64 |  |
| 34110 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 |  |
| 34110 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 |  |
| 34110 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 34110 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 34110 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 34110 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 34110 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 34110 | tcgaexp | gene=ABHD15, entrez=116236, pos=chr17:27887689-27894042(-), B=696, L=582, M=589, H=604 |  |
| 34110 | tcgaexp | gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223 |  |
| 34110 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 |  |
| 34110 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 34110 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 |  |
| 34110 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 34110 | tcgaexp | gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598 |  |
| 34110 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |
| 34110 | tcgaexp | gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90 |  |
| 34110 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 |  |
| 34110 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |  |