DMR Stats | |
---|---|
Position | chr2:235404251-235404800 (View on UCSC) |
Width | 550bp |
Genomic Context | promoter |
Nearest Genes | ARL4C (0bp away) |
ANODEV p-value | 1.30140342947e-11 |
Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26748 | ARL4C | 17769 | uc002vvm.4 | chr2 | 235401686 | 235405233 | - | 550 | 100.0 | 0.1 | 0 | 12.18 | E1 (26.36), I1 (32), E2 (41.82) | 0.0 |
26748 | ARL4C | 17769 | uc002vvn.3 | chr2 | 235401686 | 235405693 | - | 550 | 100.0 | 0.1 | 0 | 0.0 | E1 (100) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
26748 | chr2 | 235404618 | 235404833 | wgEncodeRegTfbsClusteredV3 | CTCF | score:154, expCount:1, expNums:595, expScores:154, srow:2420872 |
26748 | chr2 | 235404629 | 235404633 | phastConsElements100way | lod=13 | score:247, srow:5207784 |
26748 | chr2 | 235404650 | 235404781 | phastConsElements100way | lod=1390 | score:710, srow:5207785 |
26748 | chr2 | 235404656 | 235404656 | cosmic | COSM1166843 | srow:732978 |
26748 | chr2 | 235404668 | 235404668 | cosmic | COSM117473 | srow:732979 |
26748 | chr2 | 235404674 | 235404689 | tfbsConsSites | V$ELK1_01 | score:873, zScore:2.27, srow:3016625 |
26748 | chr2 | 235404677 | 235404686 | tfbsConsSites | V$CETS1P54_01 | score:941, zScore:1.75, srow:3016626 |
26748 | chr2 | 235404686 | 235404686 | cosmic | COSM1018210 | srow:732980 |
26748 | chr2 | 235404720 | 235404720 | cosmic | COSM1318963 | srow:732981 |
26748 | chr2 | 235404730 | 235404748 | tfbsConsSites | V$PAX2_01 | score:799, zScore:2.33, srow:3016627 |
26748 | chr2 | 235404735 | 235405254 | wgEncodeRegTfbsClusteredV3 | ETS1 | score:226, expCount:1, expNums:51, expScores:226, srow:2420873 |
26748 | chr2 | 235404735 | 235404735 | cosmic | COSM1669876 | srow:732982 |
26748 | chr2 | 235404741 | 235404754 | tfbsConsSites | V$CEBPB_02 | score:847, zScore:1.66, srow:3016628 |
26748 | chr2 | 235404742 | 235404752 | tfbsConsSites | V$BACH2_01 | score:881, zScore:1.96, srow:3016629 |
26748 | chr2 | 235404743 | 235404757 | tfbsConsSites | V$TAXCREB_02 | score:764, zScore:2.02, srow:3016630 |
26748 | chr2 | 235404780 | 235404795 | tfbsConsSites | V$AHRARNT_01 | score:852, zScore:2.1, srow:3016631 |
26748 | chr2 | 235404785 | 235404795 | phastConsElements100way | lod=104 | score:453, srow:5207786 |
26748 | chr2 | 235404797 | 235404816 | phastConsElements100way | lod=231 | score:532, srow:5207787 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
26748 | cellmeth_recounts | PrEC: 1, LNCaP: 1487, DU145: 6 | |
26748 | cellmeth_diffreps_PrECvsLNCaP | A=17, B=2261, Length=1600, Event=Up, log2FC=7.06, padj=0 | |
26748 | cellmeth_diffreps_LNCaPvsDU145 | A=2417.11, B=9.35, Length=1620, Event=Down, log2FC=-8.01, padj=0 | |
26748 | cellexp | id=ENSG00000188042, name=ARL4C, PrEC=24273, str=25479, LNCaP=161, str=243, DU145=477, str=675 | |
26748 | tcgameth | site:cg11509907, B=0.09, L=0.37, H=0.38 | |
26748 | tcgaexp | gene=ARL4C, entrez=10123, pos=chr2:235401686-235405693(-), B=2057, L=1304, M=1190, H=1246 |